Strain Fitness in Marinobacter adhaerens HP15 around HP15_2228

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2226 and HP15_2227 are separated by 4 nucleotidesHP15_2227 and HP15_2228 are separated by 51 nucleotidesHP15_2228 and HP15_2229 are separated by 30 nucleotides HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577 _2226 HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872 _2227 HP15_2228: HP15_2228 - ribonuclease activity regulator protein RraA, at 2,344,924 to 2,345,403 _2228 HP15_2229: HP15_2229 - phosphoenolpyruvate synthase, at 2,345,434 to 2,347,806 _2229 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -2 -1 0 1 2at 2344.616 kb on + strand, within HP15_2227at 2344.646 kb on + strand, within HP15_2227at 2344.679 kb on + strand, within HP15_2227at 2344.712 kb on + strand, within HP15_2227at 2344.769 kb on - strand, within HP15_2227at 2345.019 kb on + strand, within HP15_2228at 2345.042 kb on - strand, within HP15_2228at 2345.897 kb on - strand, within HP15_2229at 2346.128 kb on - strand, within HP15_2229at 2346.131 kb on + strand, within HP15_2229at 2346.247 kb on - strand, within HP15_2229

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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2,344,616 + HP15_2227 0.12 +2.0
2,344,646 + HP15_2227 0.22 -1.2
2,344,679 + HP15_2227 0.33 +1.9
2,344,712 + HP15_2227 0.45 -0.9
2,344,769 - HP15_2227 0.64 -1.2
2,345,019 + HP15_2228 0.20 -0.7
2,345,042 - HP15_2228 0.25 -1.1
2,345,897 - HP15_2229 0.20 -0.9
2,346,128 - HP15_2229 0.29 -1.8
2,346,131 + HP15_2229 0.29 +0.7
2,346,247 - HP15_2229 0.34 -0.4

Or see this region's nucleotide sequence