Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2141 and HP15_2142 are separated by 77 nucleotides HP15_2142 and HP15_2143 are separated by 31 nucleotides
HP15_2141: HP15_2141 - protein containing tetratricopeptide repeats, at 2,242,751 to 2,244,625
_2141
HP15_2142: HP15_2142 - conserved hypothetical protein, secreted, at 2,244,703 to 2,245,242
_2142
HP15_2143: HP15_2143 - conserved hypothetical protein, at 2,245,274 to 2,246,383
_2143
Position (kb)
2244
2245
2246 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2243.717 kb on - strand, within HP15_2141 at 2243.822 kb on + strand, within HP15_2141 at 2243.825 kb on - strand, within HP15_2141 at 2243.870 kb on + strand, within HP15_2141 at 2243.903 kb on + strand, within HP15_2141 at 2243.903 kb on + strand, within HP15_2141 at 2243.931 kb on + strand, within HP15_2141 at 2244.124 kb on - strand, within HP15_2141 at 2244.194 kb on - strand, within HP15_2141 at 2244.254 kb on - strand, within HP15_2141 at 2244.389 kb on - strand, within HP15_2141 at 2244.412 kb on + strand, within HP15_2141 at 2244.434 kb on - strand, within HP15_2141 at 2244.444 kb on - strand at 2244.444 kb on - strand at 2244.524 kb on + strand at 2244.576 kb on + strand at 2244.709 kb on - strand at 2244.951 kb on + strand, within HP15_2142 at 2244.952 kb on - strand, within HP15_2142 at 2245.091 kb on + strand, within HP15_2142 at 2245.121 kb on + strand, within HP15_2142 at 2245.129 kb on - strand, within HP15_2142 at 2245.139 kb on - strand, within HP15_2142 at 2245.166 kb on + strand, within HP15_2142 at 2245.201 kb on - strand at 2245.279 kb on + strand at 2245.463 kb on - strand, within HP15_2143 at 2245.485 kb on + strand, within HP15_2143 at 2245.491 kb on + strand, within HP15_2143 at 2245.517 kb on + strand, within HP15_2143 at 2245.517 kb on + strand, within HP15_2143 at 2245.600 kb on + strand, within HP15_2143 at 2245.626 kb on - strand, within HP15_2143 at 2245.626 kb on - strand, within HP15_2143 at 2245.626 kb on - strand, within HP15_2143 at 2245.650 kb on - strand, within HP15_2143 at 2245.850 kb on + strand, within HP15_2143 at 2245.857 kb on + strand, within HP15_2143 at 2246.058 kb on + strand, within HP15_2143 at 2246.158 kb on + strand, within HP15_2143 at 2246.178 kb on - strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.230 kb on - strand, within HP15_2143
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,243,717 - HP15_2141 0.52 +0.3 2,243,822 + HP15_2141 0.57 -0.2 2,243,825 - HP15_2141 0.57 +1.2 2,243,870 + HP15_2141 0.60 -0.3 2,243,903 + HP15_2141 0.61 +0.7 2,243,903 + HP15_2141 0.61 +1.7 2,243,931 + HP15_2141 0.63 +1.0 2,244,124 - HP15_2141 0.73 +1.6 2,244,194 - HP15_2141 0.77 -0.7 2,244,254 - HP15_2141 0.80 -0.7 2,244,389 - HP15_2141 0.87 -0.7 2,244,412 + HP15_2141 0.89 +1.9 2,244,434 - HP15_2141 0.90 +0.6 2,244,444 - -0.7 2,244,444 - +0.4 2,244,524 + -3.4 2,244,576 + -1.1 2,244,709 - +0.8 2,244,951 + HP15_2142 0.46 +1.8 2,244,952 - HP15_2142 0.46 +1.8 2,245,091 + HP15_2142 0.72 +0.3 2,245,121 + HP15_2142 0.77 +0.6 2,245,129 - HP15_2142 0.79 +2.7 2,245,139 - HP15_2142 0.81 +1.3 2,245,166 + HP15_2142 0.86 -0.5 2,245,201 - -0.6 2,245,279 + +1.7 2,245,463 - HP15_2143 0.17 -0.2 2,245,485 + HP15_2143 0.19 +0.1 2,245,491 + HP15_2143 0.20 -0.4 2,245,517 + HP15_2143 0.22 +0.1 2,245,517 + HP15_2143 0.22 +0.7 2,245,600 + HP15_2143 0.29 +0.6 2,245,626 - HP15_2143 0.32 -1.2 2,245,626 - HP15_2143 0.32 -0.6 2,245,626 - HP15_2143 0.32 -1.3 2,245,650 - HP15_2143 0.34 +1.9 2,245,850 + HP15_2143 0.52 +1.5 2,245,857 + HP15_2143 0.53 +1.7 2,246,058 + HP15_2143 0.71 +2.0 2,246,158 + HP15_2143 0.80 +1.9 2,246,178 - HP15_2143 0.81 +1.8 2,246,217 + HP15_2143 0.85 -0.1 2,246,217 + HP15_2143 0.85 -0.0 2,246,230 - HP15_2143 0.86 -1.1
Or see this region's nucleotide sequence