Strain Fitness in Marinobacter adhaerens HP15 around HP15_1922

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1921 and HP15_1922 overlap by 4 nucleotidesHP15_1922 and HP15_1923 overlap by 11 nucleotides HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073 _1921 HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948 _1922 HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518 _1923 Position (kb) 2038 2039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2037.192 kb on + strand, within HP15_1921at 2037.249 kb on - strand, within HP15_1921at 2037.487 kb on + strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.495 kb on - strand, within HP15_1921at 2037.520 kb on + strand, within HP15_1921at 2037.548 kb on + strand, within HP15_1921at 2037.548 kb on + strand, within HP15_1921at 2037.556 kb on - strand, within HP15_1921at 2037.566 kb on - strand, within HP15_1921at 2037.579 kb on + strand, within HP15_1921at 2037.579 kb on + strand, within HP15_1921at 2037.587 kb on - strand, within HP15_1921at 2037.606 kb on + strand, within HP15_1921at 2037.670 kb on + strand, within HP15_1921at 2037.780 kb on + strand, within HP15_1921at 2037.814 kb on + strand, within HP15_1921at 2037.962 kb on + strandat 2037.962 kb on - strandat 2038.017 kb on + strandat 2038.113 kb on - strandat 2038.204 kb on + strand, within HP15_1922at 2038.224 kb on - strand, within HP15_1922at 2038.355 kb on - strand, within HP15_1922at 2038.585 kb on + strand, within HP15_1922at 2038.587 kb on + strand, within HP15_1922at 2038.735 kb on + strand, within HP15_1922at 2038.853 kb on - strand, within HP15_1922at 2038.853 kb on - strand, within HP15_1922at 2038.919 kb on - strandat 2038.923 kb on + strandat 2039.002 kb on - strandat 2039.102 kb on + strand, within HP15_1923at 2039.113 kb on + strand, within HP15_1923at 2039.167 kb on - strand, within HP15_1923at 2039.237 kb on - strand, within HP15_1923at 2039.276 kb on + strand, within HP15_1923at 2039.294 kb on + strand, within HP15_1923at 2039.382 kb on - strand, within HP15_1923at 2039.412 kb on - strand, within HP15_1923at 2039.511 kb on + strand, within HP15_1923at 2039.511 kb on + strand, within HP15_1923at 2039.707 kb on + strand, within HP15_1923at 2039.779 kb on + strand, within HP15_1923at 2039.787 kb on + strand, within HP15_1923at 2039.787 kb on - strand, within HP15_1923

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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2,037,192 + HP15_1921 0.35 -0.1
2,037,249 - HP15_1921 0.39 +0.8
2,037,487 + HP15_1921 0.57 -1.0
2,037,495 - HP15_1921 0.57 +1.4
2,037,495 - HP15_1921 0.57 -1.0
2,037,495 - HP15_1921 0.57 +2.6
2,037,495 - HP15_1921 0.57 -0.7
2,037,495 - HP15_1921 0.57 +2.2
2,037,495 - HP15_1921 0.57 +2.5
2,037,520 + HP15_1921 0.59 -0.3
2,037,548 + HP15_1921 0.61 +1.0
2,037,548 + HP15_1921 0.61 -0.4
2,037,556 - HP15_1921 0.62 +1.6
2,037,566 - HP15_1921 0.63 +1.7
2,037,579 + HP15_1921 0.64 -0.6
2,037,579 + HP15_1921 0.64 -0.4
2,037,587 - HP15_1921 0.64 -0.8
2,037,606 + HP15_1921 0.66 -0.6
2,037,670 + HP15_1921 0.70 -0.5
2,037,780 + HP15_1921 0.78 -0.2
2,037,814 + HP15_1921 0.81 -1.0
2,037,962 + -0.5
2,037,962 - -0.9
2,038,017 + -0.4
2,038,113 - +2.5
2,038,204 + HP15_1922 0.15 +2.3
2,038,224 - HP15_1922 0.18 -1.1
2,038,355 - HP15_1922 0.32 +0.5
2,038,585 + HP15_1922 0.59 -0.9
2,038,587 + HP15_1922 0.59 -1.0
2,038,735 + HP15_1922 0.76 -0.6
2,038,853 - HP15_1922 0.89 -1.3
2,038,853 - HP15_1922 0.89 +2.8
2,038,919 - +1.4
2,038,923 + +1.8
2,039,002 - +1.7
2,039,102 + HP15_1923 0.10 -1.3
2,039,113 + HP15_1923 0.11 -1.2
2,039,167 - HP15_1923 0.14 +1.2
2,039,237 - HP15_1923 0.19 -1.1
2,039,276 + HP15_1923 0.21 +2.3
2,039,294 + HP15_1923 0.23 -0.2
2,039,382 - HP15_1923 0.28 +2.4
2,039,412 - HP15_1923 0.30 +0.4
2,039,511 + HP15_1923 0.36 -0.5
2,039,511 + HP15_1923 0.36 -1.3
2,039,707 + HP15_1923 0.49 +2.2
2,039,779 + HP15_1923 0.53 -1.8
2,039,787 + HP15_1923 0.54 +2.2
2,039,787 - HP15_1923 0.54 -3.4

Or see this region's nucleotide sequence