Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1847 and HP15_1848 are separated by 88 nucleotides HP15_1848 and HP15_1849 are separated by 134 nucleotides HP15_1849 and HP15_1850 are separated by 158 nucleotides HP15_1850 and HP15_1851 are separated by 326 nucleotides
HP15_1847: HP15_1847 - hypothetical protein, at 1,947,234 to 1,947,374
_1847
HP15_1848: HP15_1848 - conserved hypothetical protein, secreted, at 1,947,463 to 1,948,080
_1848
HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051
_1849
HP15_1850: HP15_1850 - conserved hypothetical protein, at 1,949,210 to 1,949,623
_1850
HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341
_1851
Position (kb)
1948
1949
1950 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1947.282 kb on - strand, within HP15_1847 at 1947.287 kb on + strand, within HP15_1847 at 1947.500 kb on + strand at 1947.528 kb on - strand, within HP15_1848 at 1947.676 kb on - strand, within HP15_1848 at 1947.676 kb on - strand, within HP15_1848 at 1947.678 kb on + strand, within HP15_1848 at 1947.686 kb on - strand, within HP15_1848 at 1947.732 kb on + strand, within HP15_1848 at 1947.732 kb on + strand, within HP15_1848 at 1947.865 kb on - strand, within HP15_1848 at 1947.936 kb on - strand, within HP15_1848 at 1948.014 kb on + strand, within HP15_1848 at 1948.014 kb on + strand, within HP15_1848 at 1948.014 kb on + strand, within HP15_1848 at 1948.022 kb on - strand at 1948.058 kb on + strand at 1948.208 kb on + strand at 1948.222 kb on + strand at 1948.250 kb on + strand at 1948.367 kb on - strand, within HP15_1849 at 1948.378 kb on + strand, within HP15_1849 at 1948.433 kb on - strand, within HP15_1849 at 1948.601 kb on + strand, within HP15_1849 at 1948.701 kb on + strand, within HP15_1849 at 1948.734 kb on + strand, within HP15_1849 at 1948.760 kb on + strand, within HP15_1849 at 1948.869 kb on - strand, within HP15_1849 at 1948.965 kb on + strand, within HP15_1849 at 1948.973 kb on - strand at 1949.126 kb on + strand at 1949.134 kb on - strand at 1949.140 kb on - strand at 1949.283 kb on - strand, within HP15_1850 at 1949.319 kb on + strand, within HP15_1850 at 1949.429 kb on + strand, within HP15_1850 at 1949.509 kb on + strand, within HP15_1850 at 1949.517 kb on - strand, within HP15_1850 at 1949.523 kb on + strand, within HP15_1850 at 1949.671 kb on + strand at 1949.679 kb on - strand at 1949.965 kb on - strand at 1949.987 kb on + strand at 1949.994 kb on - strand at 1949.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 1,947,282 - HP15_1847 0.34 -0.0 1,947,287 + HP15_1847 0.38 -0.2 1,947,500 + +0.6 1,947,528 - HP15_1848 0.11 +1.0 1,947,676 - HP15_1848 0.34 +1.1 1,947,676 - HP15_1848 0.34 +0.0 1,947,678 + HP15_1848 0.35 +3.8 1,947,686 - HP15_1848 0.36 +3.2 1,947,732 + HP15_1848 0.44 -0.1 1,947,732 + HP15_1848 0.44 -0.1 1,947,865 - HP15_1848 0.65 -0.7 1,947,936 - HP15_1848 0.77 -1.4 1,948,014 + HP15_1848 0.89 +0.3 1,948,014 + HP15_1848 0.89 -0.9 1,948,014 + HP15_1848 0.89 -1.0 1,948,022 - -0.6 1,948,058 + -0.0 1,948,208 + -2.5 1,948,222 + -0.5 1,948,250 + +2.9 1,948,367 - HP15_1849 0.18 -0.4 1,948,378 + HP15_1849 0.19 -0.3 1,948,433 - HP15_1849 0.26 +1.2 1,948,601 + HP15_1849 0.46 -1.5 1,948,701 + HP15_1849 0.58 -0.6 1,948,734 + HP15_1849 0.62 -1.8 1,948,760 + HP15_1849 0.65 +0.2 1,948,869 - HP15_1849 0.78 +0.7 1,948,965 + HP15_1849 0.90 -0.1 1,948,973 - -1.4 1,949,126 + +1.7 1,949,134 - -0.6 1,949,140 - +2.3 1,949,283 - HP15_1850 0.18 +0.0 1,949,319 + HP15_1850 0.26 +0.2 1,949,429 + HP15_1850 0.53 +1.1 1,949,509 + HP15_1850 0.72 +0.1 1,949,517 - HP15_1850 0.74 +2.0 1,949,523 + HP15_1850 0.76 +1.9 1,949,671 + -1.0 1,949,679 - -0.0 1,949,965 - -1.9 1,949,987 + -0.6 1,949,994 - -0.8 1,949,995 - -2.1
Or see this region's nucleotide sequence