Strain Fitness in Marinobacter adhaerens HP15 around HP15_1849

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1847 and HP15_1848 are separated by 88 nucleotidesHP15_1848 and HP15_1849 are separated by 134 nucleotidesHP15_1849 and HP15_1850 are separated by 158 nucleotidesHP15_1850 and HP15_1851 are separated by 326 nucleotides HP15_1847: HP15_1847 - hypothetical protein, at 1,947,234 to 1,947,374 _1847 HP15_1848: HP15_1848 - conserved hypothetical protein, secreted, at 1,947,463 to 1,948,080 _1848 HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051 _1849 HP15_1850: HP15_1850 - conserved hypothetical protein, at 1,949,210 to 1,949,623 _1850 HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341 _1851 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1947.282 kb on - strand, within HP15_1847at 1947.287 kb on + strand, within HP15_1847at 1947.500 kb on + strandat 1947.528 kb on - strand, within HP15_1848at 1947.676 kb on - strand, within HP15_1848at 1947.676 kb on - strand, within HP15_1848at 1947.678 kb on + strand, within HP15_1848at 1947.686 kb on - strand, within HP15_1848at 1947.732 kb on + strand, within HP15_1848at 1947.732 kb on + strand, within HP15_1848at 1947.865 kb on - strand, within HP15_1848at 1947.936 kb on - strand, within HP15_1848at 1948.014 kb on + strand, within HP15_1848at 1948.014 kb on + strand, within HP15_1848at 1948.014 kb on + strand, within HP15_1848at 1948.022 kb on - strandat 1948.058 kb on + strandat 1948.208 kb on + strandat 1948.222 kb on + strandat 1948.250 kb on + strandat 1948.367 kb on - strand, within HP15_1849at 1948.378 kb on + strand, within HP15_1849at 1948.433 kb on - strand, within HP15_1849at 1948.601 kb on + strand, within HP15_1849at 1948.701 kb on + strand, within HP15_1849at 1948.734 kb on + strand, within HP15_1849at 1948.760 kb on + strand, within HP15_1849at 1948.869 kb on - strand, within HP15_1849at 1948.965 kb on + strand, within HP15_1849at 1948.973 kb on - strandat 1949.126 kb on + strandat 1949.134 kb on - strandat 1949.140 kb on - strandat 1949.283 kb on - strand, within HP15_1850at 1949.319 kb on + strand, within HP15_1850at 1949.429 kb on + strand, within HP15_1850at 1949.509 kb on + strand, within HP15_1850at 1949.517 kb on - strand, within HP15_1850at 1949.523 kb on + strand, within HP15_1850at 1949.671 kb on + strandat 1949.679 kb on - strandat 1949.965 kb on - strandat 1949.987 kb on + strandat 1949.994 kb on - strandat 1949.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,947,282 - HP15_1847 0.34 -0.0
1,947,287 + HP15_1847 0.38 -0.2
1,947,500 + +0.6
1,947,528 - HP15_1848 0.11 +1.0
1,947,676 - HP15_1848 0.34 +1.1
1,947,676 - HP15_1848 0.34 +0.0
1,947,678 + HP15_1848 0.35 +3.8
1,947,686 - HP15_1848 0.36 +3.2
1,947,732 + HP15_1848 0.44 -0.1
1,947,732 + HP15_1848 0.44 -0.1
1,947,865 - HP15_1848 0.65 -0.7
1,947,936 - HP15_1848 0.77 -1.4
1,948,014 + HP15_1848 0.89 +0.3
1,948,014 + HP15_1848 0.89 -0.9
1,948,014 + HP15_1848 0.89 -1.0
1,948,022 - -0.6
1,948,058 + -0.0
1,948,208 + -2.5
1,948,222 + -0.5
1,948,250 + +2.9
1,948,367 - HP15_1849 0.18 -0.4
1,948,378 + HP15_1849 0.19 -0.3
1,948,433 - HP15_1849 0.26 +1.2
1,948,601 + HP15_1849 0.46 -1.5
1,948,701 + HP15_1849 0.58 -0.6
1,948,734 + HP15_1849 0.62 -1.8
1,948,760 + HP15_1849 0.65 +0.2
1,948,869 - HP15_1849 0.78 +0.7
1,948,965 + HP15_1849 0.90 -0.1
1,948,973 - -1.4
1,949,126 + +1.7
1,949,134 - -0.6
1,949,140 - +2.3
1,949,283 - HP15_1850 0.18 +0.0
1,949,319 + HP15_1850 0.26 +0.2
1,949,429 + HP15_1850 0.53 +1.1
1,949,509 + HP15_1850 0.72 +0.1
1,949,517 - HP15_1850 0.74 +2.0
1,949,523 + HP15_1850 0.76 +1.9
1,949,671 + -1.0
1,949,679 - -0.0
1,949,965 - -1.9
1,949,987 + -0.6
1,949,994 - -0.8
1,949,995 - -2.1

Or see this region's nucleotide sequence