Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1787 and HP15_1788 are separated by 3 nucleotides HP15_1788 and HP15_1789 overlap by 14 nucleotides HP15_1789 and HP15_1790 are separated by 41 nucleotides HP15_1790 and HP15_1791 are separated by 252 nucleotides
HP15_1787: HP15_1787 - sulfur relay, TusB/DsrH-like protein, at 1,879,989 to 1,880,201
_1787
HP15_1788: HP15_1788 - DsrC-like protein, at 1,880,205 to 1,880,531
_1788
HP15_1789: HP15_1789 - conserved hypothetical protein, at 1,880,518 to 1,880,886
_1789
HP15_1790: HP15_1790 - conserved hypothetical protein, membrane, at 1,880,928 to 1,882,094
_1790
HP15_1791: HP15_1791 - yhgI protein, at 1,882,347 to 1,882,934
_1791
Position (kb)
1880
1881
1882
1883 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1880.577 kb on + strand, within HP15_1789 at 1880.609 kb on + strand, within HP15_1789 at 1880.736 kb on - strand, within HP15_1789 at 1880.764 kb on - strand, within HP15_1789 at 1880.895 kb on + strand at 1880.896 kb on + strand at 1880.896 kb on - strand at 1881.216 kb on - strand, within HP15_1790 at 1881.227 kb on + strand, within HP15_1790 at 1881.285 kb on + strand, within HP15_1790 at 1881.363 kb on + strand, within HP15_1790 at 1881.364 kb on + strand, within HP15_1790 at 1881.372 kb on - strand, within HP15_1790 at 1881.405 kb on + strand, within HP15_1790 at 1881.433 kb on - strand, within HP15_1790 at 1881.451 kb on + strand, within HP15_1790 at 1881.564 kb on - strand, within HP15_1790 at 1881.606 kb on - strand, within HP15_1790 at 1881.679 kb on + strand, within HP15_1790 at 1881.731 kb on + strand, within HP15_1790 at 1881.731 kb on + strand, within HP15_1790 at 1881.744 kb on + strand, within HP15_1790 at 1881.752 kb on + strand, within HP15_1790 at 1881.938 kb on + strand, within HP15_1790 at 1881.960 kb on + strand, within HP15_1790 at 1881.989 kb on + strand at 1881.989 kb on + strand at 1881.997 kb on - strand at 1882.021 kb on - strand at 1882.120 kb on - strand at 1882.128 kb on + strand at 1882.137 kb on + strand at 1882.193 kb on + strand at 1882.193 kb on + strand at 1882.201 kb on - strand at 1882.201 kb on - strand at 1882.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 1,880,577 + HP15_1789 0.16 +0.2 1,880,609 + HP15_1789 0.25 -1.3 1,880,736 - HP15_1789 0.59 +1.3 1,880,764 - HP15_1789 0.67 -2.3 1,880,895 + -0.8 1,880,896 + -0.9 1,880,896 - -0.5 1,881,216 - HP15_1790 0.25 +1.1 1,881,227 + HP15_1790 0.26 +1.6 1,881,285 + HP15_1790 0.31 +1.6 1,881,363 + HP15_1790 0.37 +4.7 1,881,364 + HP15_1790 0.37 -0.8 1,881,372 - HP15_1790 0.38 +1.7 1,881,405 + HP15_1790 0.41 +0.1 1,881,433 - HP15_1790 0.43 -1.0 1,881,451 + HP15_1790 0.45 +0.9 1,881,564 - HP15_1790 0.54 +0.0 1,881,606 - HP15_1790 0.58 -0.6 1,881,679 + HP15_1790 0.64 +1.0 1,881,731 + HP15_1790 0.69 -0.8 1,881,731 + HP15_1790 0.69 -0.9 1,881,744 + HP15_1790 0.70 +0.0 1,881,752 + HP15_1790 0.71 -0.6 1,881,938 + HP15_1790 0.87 +1.7 1,881,960 + HP15_1790 0.88 -1.0 1,881,989 + +1.2 1,881,989 + -0.4 1,881,997 - +1.6 1,882,021 - -0.5 1,882,120 - -2.4 1,882,128 + +0.4 1,882,137 + +0.3 1,882,193 + +1.0 1,882,193 + -0.1 1,882,201 - -0.2 1,882,201 - +1.5 1,882,201 - +1.7
Or see this region's nucleotide sequence