Strain Fitness in Marinobacter adhaerens HP15 around HP15_1631

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1630 and HP15_1631 are separated by 9 nucleotidesHP15_1631 and HP15_1632 are separated by 5 nucleotidesHP15_1632 and HP15_1633 are separated by 26 nucleotides HP15_1630: HP15_1630 - serine/threonine protein kinase, at 1,728,849 to 1,730,693 _1630 HP15_1631: HP15_1631 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data), at 1,730,703 to 1,731,839 _1631 HP15_1632: HP15_1632 - protein containing biotin/lipoyl attachment domain, at 1,731,845 to 1,732,300 _1632 HP15_1633: HP15_1633 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 1,732,327 to 1,733,304 _1633 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1729.728 kb on - strand, within HP15_1630at 1729.896 kb on + strand, within HP15_1630at 1730.045 kb on + strand, within HP15_1630at 1730.080 kb on + strand, within HP15_1630at 1730.266 kb on + strand, within HP15_1630at 1730.404 kb on - strand, within HP15_1630at 1730.435 kb on - strand, within HP15_1630at 1730.531 kb on - strandat 1730.582 kb on - strandat 1730.629 kb on - strandat 1730.649 kb on + strandat 1730.718 kb on - strandat 1730.926 kb on + strand, within HP15_1631at 1730.982 kb on - strand, within HP15_1631at 1731.078 kb on + strand, within HP15_1631at 1731.239 kb on + strand, within HP15_1631at 1731.391 kb on + strand, within HP15_1631at 1731.399 kb on - strand, within HP15_1631at 1731.436 kb on + strand, within HP15_1631at 1731.488 kb on + strand, within HP15_1631at 1731.602 kb on + strand, within HP15_1631at 1731.602 kb on + strand, within HP15_1631at 1731.612 kb on + strand, within HP15_1631at 1731.770 kb on + strandat 1731.799 kb on + strandat 1732.058 kb on + strand, within HP15_1632at 1732.293 kb on - strandat 1732.308 kb on + strandat 1732.308 kb on + strandat 1732.308 kb on + strandat 1732.315 kb on + strandat 1732.316 kb on - strandat 1732.323 kb on - strandat 1732.369 kb on - strandat 1732.417 kb on - strandat 1732.549 kb on - strand, within HP15_1633at 1732.675 kb on + strand, within HP15_1633at 1732.690 kb on + strand, within HP15_1633at 1732.744 kb on + strand, within HP15_1633at 1732.818 kb on - strand, within HP15_1633

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,729,728 - HP15_1630 0.48 +1.1
1,729,896 + HP15_1630 0.57 +0.2
1,730,045 + HP15_1630 0.65 -0.6
1,730,080 + HP15_1630 0.67 +1.7
1,730,266 + HP15_1630 0.77 +0.0
1,730,404 - HP15_1630 0.84 -1.2
1,730,435 - HP15_1630 0.86 +0.1
1,730,531 - +1.1
1,730,582 - +3.3
1,730,629 - -2.4
1,730,649 + +2.7
1,730,718 - +2.0
1,730,926 + HP15_1631 0.20 -0.0
1,730,982 - HP15_1631 0.25 +0.7
1,731,078 + HP15_1631 0.33 -0.9
1,731,239 + HP15_1631 0.47 +3.8
1,731,391 + HP15_1631 0.61 +0.0
1,731,399 - HP15_1631 0.61 +2.0
1,731,436 + HP15_1631 0.64 +2.0
1,731,488 + HP15_1631 0.69 +0.4
1,731,602 + HP15_1631 0.79 -1.1
1,731,602 + HP15_1631 0.79 +1.8
1,731,612 + HP15_1631 0.80 +2.4
1,731,770 + +1.0
1,731,799 + +1.4
1,732,058 + HP15_1632 0.47 +1.1
1,732,293 - +0.9
1,732,308 + +0.2
1,732,308 + -0.4
1,732,308 + -0.2
1,732,315 + -0.1
1,732,316 - -0.1
1,732,323 - +1.9
1,732,369 - -0.5
1,732,417 - +0.3
1,732,549 - HP15_1633 0.23 +0.2
1,732,675 + HP15_1633 0.36 -3.2
1,732,690 + HP15_1633 0.37 +1.5
1,732,744 + HP15_1633 0.43 -0.5
1,732,818 - HP15_1633 0.50 +0.5

Or see this region's nucleotide sequence