Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_138 and HP15_139 are separated by 93 nucleotides HP15_139 and HP15_140 overlap by 1 nucleotides HP15_140 and HP15_141 are separated by 844 nucleotides
HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687
_138
HP15_139: HP15_139 - membrane protein, at 144,781 to 145,143
_139
HP15_140: HP15_140 - hypothetical protein, at 145,143 to 145,295
_140
HP15_141: HP15_141 - transcriptional regulator, at 146,140 to 147,564
_141
Position (kb)
145
146 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 144.298 kb on + strand, within HP15_138 at 144.298 kb on + strand, within HP15_138 at 144.478 kb on + strand, within HP15_138 at 144.501 kb on - strand, within HP15_138 at 144.547 kb on - strand, within HP15_138 at 144.547 kb on - strand, within HP15_138 at 144.595 kb on + strand at 144.613 kb on - strand at 144.621 kb on + strand at 144.662 kb on - strand at 144.668 kb on + strand at 144.723 kb on - strand at 144.723 kb on - strand at 144.732 kb on - strand at 144.769 kb on - strand at 144.769 kb on - strand at 144.883 kb on + strand, within HP15_139 at 144.888 kb on + strand, within HP15_139 at 144.898 kb on + strand, within HP15_139 at 144.904 kb on + strand, within HP15_139 at 144.906 kb on - strand, within HP15_139 at 144.944 kb on + strand, within HP15_139 at 144.944 kb on + strand, within HP15_139 at 144.952 kb on - strand, within HP15_139 at 144.979 kb on - strand, within HP15_139 at 145.029 kb on - strand, within HP15_139 at 145.094 kb on + strand, within HP15_139 at 145.153 kb on - strand at 145.153 kb on - strand at 145.193 kb on + strand, within HP15_140 at 145.269 kb on + strand, within HP15_140 at 145.355 kb on + strand at 145.363 kb on - strand at 145.506 kb on - strand at 145.547 kb on - strand at 145.575 kb on - strand at 145.637 kb on - strand at 145.684 kb on + strand at 145.684 kb on + strand at 145.719 kb on - strand at 145.771 kb on - strand at 145.929 kb on + strand at 145.942 kb on - strand at 146.000 kb on + strand at 146.113 kb on + strand at 146.130 kb on + strand at 146.138 kb on - strand at 146.210 kb on + strand at 146.230 kb on - strand at 146.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 144,298 + HP15_138 0.65 +1.2 144,298 + HP15_138 0.65 +0.2 144,478 + HP15_138 0.81 -0.0 144,501 - HP15_138 0.83 -0.6 144,547 - HP15_138 0.87 -0.6 144,547 - HP15_138 0.87 +0.2 144,595 + -0.4 144,613 - +1.2 144,621 + +1.9 144,662 - -0.5 144,668 + -1.1 144,723 - -0.9 144,723 - -0.5 144,732 - -0.1 144,769 - +0.1 144,769 - -1.3 144,883 + HP15_139 0.28 +1.9 144,888 + HP15_139 0.29 +1.8 144,898 + HP15_139 0.32 +1.6 144,904 + HP15_139 0.34 -0.2 144,906 - HP15_139 0.34 -1.1 144,944 + HP15_139 0.45 +0.3 144,944 + HP15_139 0.45 -2.0 144,952 - HP15_139 0.47 +1.6 144,979 - HP15_139 0.55 -1.4 145,029 - HP15_139 0.68 +1.1 145,094 + HP15_139 0.86 -1.0 145,153 - +2.2 145,153 - +0.8 145,193 + HP15_140 0.33 -0.7 145,269 + HP15_140 0.82 +2.6 145,355 + -0.4 145,363 - +0.6 145,506 - -1.0 145,547 - +0.0 145,575 - -0.5 145,637 - -0.1 145,684 + +1.7 145,684 + -0.2 145,719 - -1.8 145,771 - +1.9 145,929 + -0.5 145,942 - -0.6 146,000 + +1.8 146,113 + -0.8 146,130 + +0.1 146,138 - -1.4 146,210 + -0.9 146,230 - +2.2 146,230 - -0.1
Or see this region's nucleotide sequence