Strain Fitness in Marinobacter adhaerens HP15 around HP15_1218

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1216 and HP15_1217 overlap by 2 nucleotidesHP15_1217 and HP15_1218 are separated by 11 nucleotidesHP15_1218 and HP15_1219 are separated by 6 nucleotides HP15_1216: HP15_1216 - dihydroorotase, homodimeric type, at 1,265,471 to 1,266,502 _1216 HP15_1217: HP15_1217 - hypothetical protein, at 1,266,501 to 1,266,674 _1217 HP15_1218: HP15_1218 - OmpA/MotB domain protein, at 1,266,686 to 1,267,603 _1218 HP15_1219: HP15_1219 - histone deacetylase/AcuC/AphA family protein, at 1,267,610 to 1,268,536 _1219 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1265.850 kb on + strand, within HP15_1216at 1266.258 kb on + strand, within HP15_1216at 1266.491 kb on - strandat 1266.717 kb on - strandat 1266.717 kb on - strandat 1266.802 kb on + strand, within HP15_1218at 1266.869 kb on + strand, within HP15_1218at 1266.994 kb on - strand, within HP15_1218at 1267.112 kb on - strand, within HP15_1218at 1267.137 kb on + strand, within HP15_1218at 1267.241 kb on - strand, within HP15_1218at 1267.246 kb on - strand, within HP15_1218at 1267.246 kb on - strand, within HP15_1218at 1267.297 kb on - strand, within HP15_1218at 1267.302 kb on - strand, within HP15_1218at 1267.436 kb on - strand, within HP15_1218at 1267.637 kb on - strandat 1267.641 kb on + strandat 1267.685 kb on - strandat 1267.948 kb on + strand, within HP15_1219at 1267.989 kb on - strand, within HP15_1219at 1267.991 kb on + strand, within HP15_1219at 1267.999 kb on - strand, within HP15_1219at 1268.183 kb on + strand, within HP15_1219at 1268.461 kb on + strandat 1268.469 kb on - strandat 1268.531 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,265,850 + HP15_1216 0.37 -4.5
1,266,258 + HP15_1216 0.76 -2.4
1,266,491 - +1.8
1,266,717 - +0.8
1,266,717 - +1.8
1,266,802 + HP15_1218 0.13 +1.9
1,266,869 + HP15_1218 0.20 +2.5
1,266,994 - HP15_1218 0.34 +1.8
1,267,112 - HP15_1218 0.46 +2.6
1,267,137 + HP15_1218 0.49 +1.0
1,267,241 - HP15_1218 0.60 +1.9
1,267,246 - HP15_1218 0.61 +1.7
1,267,246 - HP15_1218 0.61 +2.2
1,267,297 - HP15_1218 0.67 +2.1
1,267,302 - HP15_1218 0.67 +1.8
1,267,436 - HP15_1218 0.82 +2.4
1,267,637 - -1.1
1,267,641 + -0.8
1,267,685 - +1.9
1,267,948 + HP15_1219 0.36 +1.2
1,267,989 - HP15_1219 0.41 +0.5
1,267,991 + HP15_1219 0.41 +1.5
1,267,999 - HP15_1219 0.42 -0.5
1,268,183 + HP15_1219 0.62 +2.8
1,268,461 + +2.8
1,268,469 - -0.4
1,268,531 + +2.0

Or see this region's nucleotide sequence