Strain Fitness in Marinobacter adhaerens HP15 around HP15_1124

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1122 and HP15_1123 are separated by 293 nucleotidesHP15_1123 and HP15_1124 are separated by 15 nucleotidesHP15_1124 and HP15_1125 are separated by 333 nucleotides HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562 _1122 HP15_1123: HP15_1123 - transcriptional regulator, TetR family, at 1,150,856 to 1,151,470 _1123 HP15_1124: HP15_1124 - conserved hypothetical protein, at 1,151,486 to 1,152,439 _1124 HP15_1125: HP15_1125 - glutathione S-transferase YghU, at 1,152,773 to 1,153,393 _1125 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1150.522 kb on - strandat 1150.582 kb on + strandat 1150.587 kb on - strandat 1150.878 kb on - strandat 1150.907 kb on + strandat 1150.920 kb on - strand, within HP15_1123at 1151.073 kb on + strand, within HP15_1123at 1151.097 kb on - strand, within HP15_1123at 1151.254 kb on - strand, within HP15_1123at 1151.343 kb on + strand, within HP15_1123at 1151.343 kb on + strand, within HP15_1123at 1151.351 kb on - strand, within HP15_1123at 1151.351 kb on - strand, within HP15_1123at 1151.351 kb on - strand, within HP15_1123at 1151.351 kb on - strand, within HP15_1123at 1151.351 kb on - strand, within HP15_1123at 1151.356 kb on + strand, within HP15_1123at 1151.409 kb on + strandat 1151.446 kb on + strandat 1151.457 kb on - strandat 1151.618 kb on - strand, within HP15_1124at 1151.985 kb on + strand, within HP15_1124at 1151.987 kb on - strand, within HP15_1124at 1152.181 kb on + strand, within HP15_1124at 1152.181 kb on + strandat 1152.208 kb on - strand, within HP15_1124at 1152.236 kb on + strand, within HP15_1124at 1152.343 kb on - strand, within HP15_1124at 1152.473 kb on + strandat 1152.481 kb on + strandat 1152.481 kb on - strandat 1152.481 kb on - strandat 1152.481 kb on - strandat 1152.908 kb on + strand, within HP15_1125at 1152.935 kb on + strand, within HP15_1125at 1152.937 kb on + strand, within HP15_1125at 1153.012 kb on + strand, within HP15_1125at 1153.105 kb on + strand, within HP15_1125at 1153.238 kb on - strand, within HP15_1125at 1153.337 kb on + strandat 1153.347 kb on - strandat 1153.355 kb on - strandat 1153.425 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,150,522 - -0.3
1,150,582 + +0.5
1,150,587 - -1.0
1,150,878 - -1.7
1,150,907 + +1.1
1,150,920 - HP15_1123 0.10 +0.0
1,151,073 + HP15_1123 0.35 +0.9
1,151,097 - HP15_1123 0.39 -0.3
1,151,254 - HP15_1123 0.65 -0.8
1,151,343 + HP15_1123 0.79 +1.5
1,151,343 + HP15_1123 0.79 -0.3
1,151,351 - HP15_1123 0.80 -0.4
1,151,351 - HP15_1123 0.80 -1.8
1,151,351 - HP15_1123 0.80 +1.5
1,151,351 - HP15_1123 0.80 -0.4
1,151,351 - HP15_1123 0.80 -0.1
1,151,356 + HP15_1123 0.81 -0.1
1,151,409 + +3.6
1,151,446 + -1.0
1,151,457 - +0.9
1,151,618 - HP15_1124 0.14 +1.4
1,151,985 + HP15_1124 0.52 +0.3
1,151,987 - HP15_1124 0.53 +2.0
1,152,181 + HP15_1124 0.73 +0.9
1,152,181 + -0.4
1,152,208 - HP15_1124 0.76 +1.5
1,152,236 + HP15_1124 0.79 +1.2
1,152,343 - HP15_1124 0.90 +0.7
1,152,473 + +2.0
1,152,481 + -0.9
1,152,481 - +0.9
1,152,481 - +0.7
1,152,481 - +0.5
1,152,908 + HP15_1125 0.22 +0.2
1,152,935 + HP15_1125 0.26 +0.2
1,152,937 + HP15_1125 0.26 +0.5
1,153,012 + HP15_1125 0.38 -2.1
1,153,105 + HP15_1125 0.53 -0.2
1,153,238 - HP15_1125 0.75 +0.1
1,153,337 + -0.1
1,153,347 - +0.9
1,153,355 - -1.1
1,153,425 + +2.8

Or see this region's nucleotide sequence