Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1122 and HP15_1123 are separated by 293 nucleotides HP15_1123 and HP15_1124 are separated by 15 nucleotides HP15_1124 and HP15_1125 are separated by 333 nucleotides
HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562
_1122
HP15_1123: HP15_1123 - transcriptional regulator, TetR family, at 1,150,856 to 1,151,470
_1123
HP15_1124: HP15_1124 - conserved hypothetical protein, at 1,151,486 to 1,152,439
_1124
HP15_1125: HP15_1125 - glutathione S-transferase YghU, at 1,152,773 to 1,153,393
_1125
Position (kb)
1151
1152
1153 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1150.522 kb on - strand at 1150.582 kb on + strand at 1150.587 kb on - strand at 1150.878 kb on - strand at 1150.907 kb on + strand at 1150.920 kb on - strand, within HP15_1123 at 1151.073 kb on + strand, within HP15_1123 at 1151.097 kb on - strand, within HP15_1123 at 1151.254 kb on - strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.356 kb on + strand, within HP15_1123 at 1151.409 kb on + strand at 1151.446 kb on + strand at 1151.457 kb on - strand at 1151.618 kb on - strand, within HP15_1124 at 1151.985 kb on + strand, within HP15_1124 at 1151.987 kb on - strand, within HP15_1124 at 1152.181 kb on + strand, within HP15_1124 at 1152.181 kb on + strand at 1152.208 kb on - strand, within HP15_1124 at 1152.236 kb on + strand, within HP15_1124 at 1152.343 kb on - strand, within HP15_1124 at 1152.473 kb on + strand at 1152.481 kb on + strand at 1152.481 kb on - strand at 1152.481 kb on - strand at 1152.481 kb on - strand at 1152.908 kb on + strand, within HP15_1125 at 1152.935 kb on + strand, within HP15_1125 at 1152.937 kb on + strand, within HP15_1125 at 1153.012 kb on + strand, within HP15_1125 at 1153.105 kb on + strand, within HP15_1125 at 1153.238 kb on - strand, within HP15_1125 at 1153.337 kb on + strand at 1153.347 kb on - strand at 1153.355 kb on - strand at 1153.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 1,150,522 - -0.3 1,150,582 + +0.5 1,150,587 - -1.0 1,150,878 - -1.7 1,150,907 + +1.1 1,150,920 - HP15_1123 0.10 +0.0 1,151,073 + HP15_1123 0.35 +0.9 1,151,097 - HP15_1123 0.39 -0.3 1,151,254 - HP15_1123 0.65 -0.8 1,151,343 + HP15_1123 0.79 +1.5 1,151,343 + HP15_1123 0.79 -0.3 1,151,351 - HP15_1123 0.80 -0.4 1,151,351 - HP15_1123 0.80 -1.8 1,151,351 - HP15_1123 0.80 +1.5 1,151,351 - HP15_1123 0.80 -0.4 1,151,351 - HP15_1123 0.80 -0.1 1,151,356 + HP15_1123 0.81 -0.1 1,151,409 + +3.6 1,151,446 + -1.0 1,151,457 - +0.9 1,151,618 - HP15_1124 0.14 +1.4 1,151,985 + HP15_1124 0.52 +0.3 1,151,987 - HP15_1124 0.53 +2.0 1,152,181 + HP15_1124 0.73 +0.9 1,152,181 + -0.4 1,152,208 - HP15_1124 0.76 +1.5 1,152,236 + HP15_1124 0.79 +1.2 1,152,343 - HP15_1124 0.90 +0.7 1,152,473 + +2.0 1,152,481 + -0.9 1,152,481 - +0.9 1,152,481 - +0.7 1,152,481 - +0.5 1,152,908 + HP15_1125 0.22 +0.2 1,152,935 + HP15_1125 0.26 +0.2 1,152,937 + HP15_1125 0.26 +0.5 1,153,012 + HP15_1125 0.38 -2.1 1,153,105 + HP15_1125 0.53 -0.2 1,153,238 - HP15_1125 0.75 +0.1 1,153,337 + -0.1 1,153,347 - +0.9 1,153,355 - -1.1 1,153,425 + +2.8
Or see this region's nucleotide sequence