Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1105 and HP15_1106 are separated by 458 nucleotides HP15_1106 and HP15_1107 are separated by 594 nucleotides
HP15_1105: HP15_1105 - hypothetical protein, at 1,132,165 to 1,132,290
_1105
HP15_1106: HP15_1106 - Rieske (2Fe-2S) domain protein, at 1,132,749 to 1,133,993
_1106
HP15_1107: HP15_1107 - oxidoreductase FAD/NAD(P)-binding domain protein, at 1,134,588 to 1,135,604
_1107
Position (kb)
1132
1133
1134 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1131.765 kb on + strand at 1131.774 kb on - strand at 1131.786 kb on - strand at 1131.801 kb on - strand at 1131.814 kb on + strand at 1131.820 kb on - strand at 1131.873 kb on + strand at 1131.952 kb on - strand at 1131.987 kb on + strand at 1132.044 kb on - strand at 1132.080 kb on + strand at 1132.082 kb on + strand at 1132.088 kb on - strand at 1132.090 kb on - strand at 1132.220 kb on + strand, within HP15_1105 at 1132.230 kb on + strand, within HP15_1105 at 1132.283 kb on + strand at 1132.293 kb on + strand at 1132.310 kb on + strand at 1132.321 kb on - strand at 1132.370 kb on - strand at 1132.955 kb on + strand, within HP15_1106 at 1133.092 kb on - strand, within HP15_1106 at 1133.094 kb on + strand, within HP15_1106 at 1133.363 kb on - strand, within HP15_1106 at 1133.446 kb on + strand, within HP15_1106 at 1133.731 kb on - strand, within HP15_1106 at 1133.782 kb on + strand, within HP15_1106 at 1133.827 kb on + strand, within HP15_1106 at 1133.830 kb on - strand, within HP15_1106 at 1133.907 kb on - strand at 1134.127 kb on - strand at 1134.201 kb on + strand at 1134.270 kb on + strand at 1134.520 kb on - strand at 1134.525 kb on - strand at 1134.525 kb on - strand at 1134.527 kb on + strand at 1134.543 kb on + strand at 1134.754 kb on + strand, within HP15_1107 at 1134.789 kb on + strand, within HP15_1107 at 1134.797 kb on + strand, within HP15_1107 at 1134.797 kb on + strand, within HP15_1107 at 1134.805 kb on - strand, within HP15_1107 at 1134.805 kb on - strand, within HP15_1107 at 1134.871 kb on - strand, within HP15_1107 at 1134.935 kb on + strand, within HP15_1107 at 1134.945 kb on + strand, within HP15_1107 at 1134.945 kb on + strand, within HP15_1107 at 1134.953 kb on - strand, within HP15_1107
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 1,131,765 + -1.8 1,131,774 - -0.5 1,131,786 - +1.5 1,131,801 - +2.4 1,131,814 + -0.9 1,131,820 - -1.0 1,131,873 + -0.5 1,131,952 - +1.4 1,131,987 + -1.7 1,132,044 - +1.3 1,132,080 + +0.4 1,132,082 + -2.2 1,132,088 - +1.2 1,132,090 - -0.2 1,132,220 + HP15_1105 0.44 +0.6 1,132,230 + HP15_1105 0.52 +2.3 1,132,283 + -0.1 1,132,293 + -0.6 1,132,310 + +2.2 1,132,321 - +2.5 1,132,370 - +1.9 1,132,955 + HP15_1106 0.17 -0.3 1,133,092 - HP15_1106 0.28 -0.8 1,133,094 + HP15_1106 0.28 -0.2 1,133,363 - HP15_1106 0.49 +0.4 1,133,446 + HP15_1106 0.56 -0.8 1,133,731 - HP15_1106 0.79 -1.8 1,133,782 + HP15_1106 0.83 -0.7 1,133,827 + HP15_1106 0.87 -1.6 1,133,830 - HP15_1106 0.87 -2.4 1,133,907 - +0.2 1,134,127 - +1.9 1,134,201 + +1.2 1,134,270 + +1.9 1,134,520 - +0.1 1,134,525 - +2.2 1,134,525 - -0.5 1,134,527 + -0.7 1,134,543 + -0.7 1,134,754 + HP15_1107 0.16 +1.8 1,134,789 + HP15_1107 0.20 -0.6 1,134,797 + HP15_1107 0.21 +0.3 1,134,797 + HP15_1107 0.21 +1.4 1,134,805 - HP15_1107 0.21 +0.9 1,134,805 - HP15_1107 0.21 -0.5 1,134,871 - HP15_1107 0.28 +0.5 1,134,935 + HP15_1107 0.34 -0.9 1,134,945 + HP15_1107 0.35 -0.4 1,134,945 + HP15_1107 0.35 +0.7 1,134,953 - HP15_1107 0.36 -1.3
Or see this region's nucleotide sequence