Strain Fitness in Marinobacter adhaerens HP15 around HP15_1093

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1091 and HP15_1092 are separated by 117 nucleotidesHP15_1092 and HP15_1093 are separated by 20 nucleotidesHP15_1093 and HP15_1094 are separated by 207 nucleotides HP15_1091: HP15_1091 - conserved hypothetical protein, at 1,117,638 to 1,118,546 _1091 HP15_1092: HP15_1092 - transposase IS3/IS911 family protein, at 1,118,664 to 1,118,930 _1092 HP15_1093: HP15_1093 - integrase catalytic subunit, at 1,118,951 to 1,119,671 _1093 HP15_1094: HP15_1094 - benzoate membrane transport protein, at 1,119,879 to 1,121,111 _1094 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1117.975 kb on - strand, within HP15_1091at 1117.975 kb on - strand, within HP15_1091at 1117.979 kb on - strand, within HP15_1091at 1117.995 kb on + strand, within HP15_1091at 1117.996 kb on + strand, within HP15_1091at 1118.020 kb on + strand, within HP15_1091at 1118.030 kb on + strand, within HP15_1091at 1118.038 kb on - strand, within HP15_1091at 1118.125 kb on + strand, within HP15_1091at 1118.159 kb on + strand, within HP15_1091at 1118.161 kb on + strand, within HP15_1091at 1118.212 kb on + strand, within HP15_1091at 1118.217 kb on + strand, within HP15_1091at 1118.217 kb on + strand, within HP15_1091at 1118.225 kb on - strand, within HP15_1091at 1118.267 kb on + strand, within HP15_1091at 1118.337 kb on + strand, within HP15_1091at 1118.346 kb on + strand, within HP15_1091at 1118.354 kb on - strand, within HP15_1091at 1118.402 kb on + strand, within HP15_1091at 1118.711 kb on - strand, within HP15_1092at 1118.743 kb on - strand, within HP15_1092at 1118.811 kb on - strand, within HP15_1092at 1118.890 kb on + strand, within HP15_1092at 1119.008 kb on - strandat 1119.040 kb on + strand, within HP15_1093at 1119.195 kb on + strand, within HP15_1093at 1119.221 kb on - strand, within HP15_1093at 1119.238 kb on - strand, within HP15_1093at 1119.254 kb on + strand, within HP15_1093at 1119.371 kb on + strand, within HP15_1093at 1119.371 kb on + strand, within HP15_1093at 1119.371 kb on + strand, within HP15_1093at 1119.441 kb on - strand, within HP15_1093at 1119.467 kb on - strand, within HP15_1093at 1119.491 kb on + strand, within HP15_1093at 1119.509 kb on - strand, within HP15_1093at 1119.524 kb on + strand, within HP15_1093at 1119.586 kb on - strand, within HP15_1093at 1119.627 kb on - strandat 1119.711 kb on - strandat 1119.720 kb on + strandat 1119.840 kb on - strandat 1120.006 kb on - strand, within HP15_1094at 1120.079 kb on - strand, within HP15_1094at 1120.159 kb on - strand, within HP15_1094at 1120.264 kb on + strand, within HP15_1094at 1120.290 kb on + strand, within HP15_1094at 1120.298 kb on - strand, within HP15_1094at 1120.303 kb on - strand, within HP15_1094at 1120.303 kb on - strand, within HP15_1094at 1120.377 kb on + strand, within HP15_1094at 1120.385 kb on - strand, within HP15_1094at 1120.392 kb on + strand, within HP15_1094at 1120.399 kb on + strand, within HP15_1094at 1120.399 kb on + strand, within HP15_1094at 1120.407 kb on - strand, within HP15_1094at 1120.407 kb on - strand, within HP15_1094at 1120.453 kb on + strand, within HP15_1094at 1120.555 kb on + strand, within HP15_1094at 1120.619 kb on - strand, within HP15_1094at 1120.619 kb on - strand, within HP15_1094at 1120.639 kb on + strand, within HP15_1094

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,117,975 - HP15_1091 0.37 +1.6
1,117,975 - HP15_1091 0.37 -0.2
1,117,979 - HP15_1091 0.38 +0.5
1,117,995 + HP15_1091 0.39 -0.7
1,117,996 + HP15_1091 0.39 -0.6
1,118,020 + HP15_1091 0.42 +1.2
1,118,030 + HP15_1091 0.43 +0.3
1,118,038 - HP15_1091 0.44 +2.0
1,118,125 + HP15_1091 0.54 -0.0
1,118,159 + HP15_1091 0.57 +0.1
1,118,161 + HP15_1091 0.58 +2.3
1,118,212 + HP15_1091 0.63 -0.6
1,118,217 + HP15_1091 0.64 +0.1
1,118,217 + HP15_1091 0.64 +1.0
1,118,225 - HP15_1091 0.65 +0.3
1,118,267 + HP15_1091 0.69 +0.2
1,118,337 + HP15_1091 0.77 -0.2
1,118,346 + HP15_1091 0.78 +1.9
1,118,354 - HP15_1091 0.79 +3.0
1,118,402 + HP15_1091 0.84 -0.6
1,118,711 - HP15_1092 0.18 -0.2
1,118,743 - HP15_1092 0.30 -0.1
1,118,811 - HP15_1092 0.55 -0.9
1,118,890 + HP15_1092 0.85 +2.1
1,119,008 - +0.7
1,119,040 + HP15_1093 0.12 +1.5
1,119,195 + HP15_1093 0.34 -0.9
1,119,221 - HP15_1093 0.37 +1.2
1,119,238 - HP15_1093 0.40 -0.3
1,119,254 + HP15_1093 0.42 +2.4
1,119,371 + HP15_1093 0.58 +1.8
1,119,371 + HP15_1093 0.58 +0.2
1,119,371 + HP15_1093 0.58 -0.6
1,119,441 - HP15_1093 0.68 -1.0
1,119,467 - HP15_1093 0.72 +1.6
1,119,491 + HP15_1093 0.75 +0.8
1,119,509 - HP15_1093 0.77 +2.3
1,119,524 + HP15_1093 0.79 -0.4
1,119,586 - HP15_1093 0.88 -0.5
1,119,627 - -1.1
1,119,711 - +1.9
1,119,720 + +2.7
1,119,840 - -0.4
1,120,006 - HP15_1094 0.10 -2.5
1,120,079 - HP15_1094 0.16 +1.6
1,120,159 - HP15_1094 0.23 -0.3
1,120,264 + HP15_1094 0.31 -0.0
1,120,290 + HP15_1094 0.33 -0.6
1,120,298 - HP15_1094 0.34 -1.3
1,120,303 - HP15_1094 0.34 +1.6
1,120,303 - HP15_1094 0.34 +1.9
1,120,377 + HP15_1094 0.40 +1.7
1,120,385 - HP15_1094 0.41 -1.1
1,120,392 + HP15_1094 0.42 +0.1
1,120,399 + HP15_1094 0.42 -0.4
1,120,399 + HP15_1094 0.42 -1.0
1,120,407 - HP15_1094 0.43 -0.4
1,120,407 - HP15_1094 0.43 +0.9
1,120,453 + HP15_1094 0.47 +1.4
1,120,555 + HP15_1094 0.55 -1.9
1,120,619 - HP15_1094 0.60 +0.0
1,120,619 - HP15_1094 0.60 -1.3
1,120,639 + HP15_1094 0.62 -0.2

Or see this region's nucleotide sequence