Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4357

Experiment: Varel_Bryant_medium_Glucose with Irgasan 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4356 and BT4357 are separated by 160 nucleotidesBT4357 and BT4358 are separated by 34 nucleotides BT4356: BT4356 - putative anti-sigma factor (NCBI ptt file), at 5,740,247 to 5,741,275 BT4356 BT4357: BT4357 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,741,436 to 5,744,972 BT4357 BT4358: BT4358 - hypothetical protein (NCBI ptt file), at 5,745,007 to 5,746,893 BT4358 Position (kb) 5741 5742 5743 5744 5745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5740.549 kb on + strand, within BT4356at 5740.550 kb on - strand, within BT4356at 5740.555 kb on - strand, within BT4356at 5740.555 kb on - strand, within BT4356at 5740.558 kb on + strand, within BT4356at 5740.559 kb on - strand, within BT4356at 5740.594 kb on - strand, within BT4356at 5740.657 kb on + strand, within BT4356at 5740.667 kb on + strand, within BT4356at 5740.667 kb on + strand, within BT4356at 5740.668 kb on - strand, within BT4356at 5740.793 kb on - strand, within BT4356at 5740.813 kb on - strand, within BT4356at 5740.848 kb on - strand, within BT4356at 5740.858 kb on + strand, within BT4356at 5740.858 kb on + strand, within BT4356at 5740.877 kb on - strand, within BT4356at 5740.894 kb on - strand, within BT4356at 5740.931 kb on - strand, within BT4356at 5740.978 kb on + strand, within BT4356at 5740.991 kb on + strand, within BT4356at 5741.090 kb on + strand, within BT4356at 5741.110 kb on + strand, within BT4356at 5741.132 kb on - strand, within BT4356at 5741.218 kb on + strandat 5741.263 kb on - strandat 5741.399 kb on + strandat 5741.530 kb on + strandat 5741.610 kb on - strandat 5741.685 kb on - strandat 5741.730 kb on - strandat 5741.770 kb on + strandat 5741.778 kb on - strandat 5741.782 kb on + strandat 5741.930 kb on + strand, within BT4357at 5742.001 kb on - strand, within BT4357at 5742.055 kb on + strand, within BT4357at 5742.234 kb on - strand, within BT4357at 5742.240 kb on - strand, within BT4357at 5742.300 kb on - strand, within BT4357at 5742.300 kb on - strand, within BT4357at 5742.328 kb on + strand, within BT4357at 5742.328 kb on + strand, within BT4357at 5742.328 kb on + strand, within BT4357at 5742.333 kb on - strand, within BT4357at 5742.333 kb on - strand, within BT4357at 5742.354 kb on - strand, within BT4357at 5742.418 kb on - strand, within BT4357at 5742.496 kb on - strand, within BT4357at 5742.504 kb on - strand, within BT4357at 5742.604 kb on - strand, within BT4357at 5742.618 kb on - strand, within BT4357at 5742.691 kb on + strand, within BT4357at 5742.693 kb on + strand, within BT4357at 5742.693 kb on + strand, within BT4357at 5742.694 kb on - strand, within BT4357at 5742.694 kb on - strand, within BT4357at 5742.694 kb on - strand, within BT4357at 5742.721 kb on - strand, within BT4357at 5742.900 kb on - strand, within BT4357at 5742.906 kb on + strand, within BT4357at 5742.951 kb on - strand, within BT4357at 5742.952 kb on + strand, within BT4357at 5742.953 kb on - strand, within BT4357at 5742.953 kb on - strand, within BT4357at 5742.953 kb on - strand, within BT4357at 5742.978 kb on - strand, within BT4357at 5742.978 kb on - strand, within BT4357at 5743.009 kb on - strand, within BT4357at 5743.009 kb on - strand, within BT4357at 5743.030 kb on + strand, within BT4357at 5743.030 kb on + strand, within BT4357at 5743.121 kb on + strand, within BT4357at 5743.121 kb on + strand, within BT4357at 5743.122 kb on - strand, within BT4357at 5743.235 kb on + strand, within BT4357at 5743.320 kb on - strand, within BT4357at 5743.327 kb on - strand, within BT4357at 5743.350 kb on - strand, within BT4357at 5743.379 kb on + strand, within BT4357at 5743.447 kb on - strand, within BT4357at 5743.452 kb on - strand, within BT4357at 5743.479 kb on - strand, within BT4357at 5743.482 kb on - strand, within BT4357at 5743.528 kb on - strand, within BT4357at 5743.557 kb on - strand, within BT4357at 5743.557 kb on - strand, within BT4357at 5743.754 kb on - strand, within BT4357at 5743.754 kb on - strand, within BT4357at 5743.757 kb on + strand, within BT4357at 5743.777 kb on - strand, within BT4357at 5743.887 kb on - strand, within BT4357at 5743.988 kb on + strand, within BT4357at 5744.100 kb on - strand, within BT4357at 5744.120 kb on + strand, within BT4357at 5744.121 kb on - strand, within BT4357at 5744.125 kb on + strand, within BT4357at 5744.271 kb on - strand, within BT4357at 5744.291 kb on + strand, within BT4357at 5744.291 kb on + strand, within BT4357at 5744.339 kb on - strand, within BT4357at 5744.486 kb on - strand, within BT4357at 5744.554 kb on + strand, within BT4357at 5744.725 kb on - strandat 5744.730 kb on - strandat 5744.798 kb on + strandat 5744.829 kb on - strandat 5745.003 kb on + strandat 5745.007 kb on - strandat 5745.055 kb on - strandat 5745.073 kb on - strandat 5745.125 kb on - strandat 5745.125 kb on - strandat 5745.125 kb on - strandat 5745.139 kb on + strandat 5745.160 kb on - strandat 5745.268 kb on + strand, within BT4358at 5745.354 kb on + strand, within BT4358at 5745.504 kb on - strand, within BT4358at 5745.508 kb on + strand, within BT4358at 5745.509 kb on - strand, within BT4358at 5745.582 kb on - strand, within BT4358at 5745.673 kb on - strand, within BT4358at 5745.718 kb on - strand, within BT4358at 5745.749 kb on - strand, within BT4358at 5745.830 kb on - strand, within BT4358at 5745.830 kb on - strand, within BT4358at 5745.850 kb on - strand, within BT4358at 5745.922 kb on + strand, within BT4358at 5745.923 kb on - strand, within BT4358at 5745.930 kb on + strand, within BT4358at 5745.965 kb on - strand, within BT4358

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Irgasan 0.025 mM
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5,740,549 + BT4356 0.29 -3.3
5,740,550 - BT4356 0.29 -0.0
5,740,555 - BT4356 0.30 -0.6
5,740,555 - BT4356 0.30 -2.3
5,740,558 + BT4356 0.30 -0.0
5,740,559 - BT4356 0.30 -1.3
5,740,594 - BT4356 0.34 -0.8
5,740,657 + BT4356 0.40 -0.0
5,740,667 + BT4356 0.41 -0.7
5,740,667 + BT4356 0.41 -1.0
5,740,668 - BT4356 0.41 -0.0
5,740,793 - BT4356 0.53 -0.0
5,740,813 - BT4356 0.55 -0.0
5,740,848 - BT4356 0.58 -0.6
5,740,858 + BT4356 0.59 -2.0
5,740,858 + BT4356 0.59 +1.0
5,740,877 - BT4356 0.61 -1.6
5,740,894 - BT4356 0.63 -1.2
5,740,931 - BT4356 0.66 -1.0
5,740,978 + BT4356 0.71 +2.3
5,740,991 + BT4356 0.72 -0.6
5,741,090 + BT4356 0.82 -0.0
5,741,110 + BT4356 0.84 -0.0
5,741,132 - BT4356 0.86 -2.3
5,741,218 + +0.7
5,741,263 - -1.0
5,741,399 + -0.0
5,741,530 + -2.0
5,741,610 - -1.3
5,741,685 - -0.9
5,741,730 - -1.0
5,741,770 + -1.9
5,741,778 - -0.0
5,741,782 + -2.3
5,741,930 + BT4357 0.14 -0.0
5,742,001 - BT4357 0.16 -2.0
5,742,055 + BT4357 0.18 -1.6
5,742,234 - BT4357 0.23 -2.2
5,742,240 - BT4357 0.23 -1.7
5,742,300 - BT4357 0.24 +0.6
5,742,300 - BT4357 0.24 -1.0
5,742,328 + BT4357 0.25 -0.6
5,742,328 + BT4357 0.25 -1.6
5,742,328 + BT4357 0.25 -0.0
5,742,333 - BT4357 0.25 -2.6
5,742,333 - BT4357 0.25 -1.1
5,742,354 - BT4357 0.26 -1.6
5,742,418 - BT4357 0.28 -1.6
5,742,496 - BT4357 0.30 -0.0
5,742,504 - BT4357 0.30 -1.7
5,742,604 - BT4357 0.33 -0.0
5,742,618 - BT4357 0.33 +1.0
5,742,691 + BT4357 0.35 -1.3
5,742,693 + BT4357 0.36 -1.4
5,742,693 + BT4357 0.36 +0.6
5,742,694 - BT4357 0.36 -0.0
5,742,694 - BT4357 0.36 -2.3
5,742,694 - BT4357 0.36 -0.6
5,742,721 - BT4357 0.36 -0.0
5,742,900 - BT4357 0.41 -1.4
5,742,906 + BT4357 0.42 -4.0
5,742,951 - BT4357 0.43 -1.7
5,742,952 + BT4357 0.43 -0.0
5,742,953 - BT4357 0.43 -1.6
5,742,953 - BT4357 0.43 -1.0
5,742,953 - BT4357 0.43 -1.4
5,742,978 - BT4357 0.44 -0.0
5,742,978 - BT4357 0.44 -0.4
5,743,009 - BT4357 0.44 +0.4
5,743,009 - BT4357 0.44 -0.7
5,743,030 + BT4357 0.45 -1.2
5,743,030 + BT4357 0.45 -0.0
5,743,121 + BT4357 0.48 -0.0
5,743,121 + BT4357 0.48 -0.0
5,743,122 - BT4357 0.48 -2.0
5,743,235 + BT4357 0.51 -1.3
5,743,320 - BT4357 0.53 +0.6
5,743,327 - BT4357 0.53 -1.0
5,743,350 - BT4357 0.54 +2.0
5,743,379 + BT4357 0.55 -3.0
5,743,447 - BT4357 0.57 +0.4
5,743,452 - BT4357 0.57 -1.3
5,743,479 - BT4357 0.58 -1.0
5,743,482 - BT4357 0.58 -2.5
5,743,528 - BT4357 0.59 -1.0
5,743,557 - BT4357 0.60 -0.6
5,743,557 - BT4357 0.60 -2.1
5,743,754 - BT4357 0.66 -0.4
5,743,754 - BT4357 0.66 -1.6
5,743,757 + BT4357 0.66 -1.6
5,743,777 - BT4357 0.66 -1.6
5,743,887 - BT4357 0.69 -2.8
5,743,988 + BT4357 0.72 -2.0
5,744,100 - BT4357 0.75 -2.6
5,744,120 + BT4357 0.76 -0.4
5,744,121 - BT4357 0.76 -1.8
5,744,125 + BT4357 0.76 -0.0
5,744,271 - BT4357 0.80 -1.5
5,744,291 + BT4357 0.81 -1.8
5,744,291 + BT4357 0.81 -1.0
5,744,339 - BT4357 0.82 +1.8
5,744,486 - BT4357 0.86 -1.6
5,744,554 + BT4357 0.88 -1.8
5,744,725 - -1.6
5,744,730 - +0.6
5,744,798 + -0.0
5,744,829 - -0.0
5,745,003 + +1.6
5,745,007 - -2.5
5,745,055 - +1.3
5,745,073 - -0.9
5,745,125 - -1.0
5,745,125 - +2.6
5,745,125 - -2.3
5,745,139 + -1.0
5,745,160 - -1.0
5,745,268 + BT4358 0.14 -0.7
5,745,354 + BT4358 0.18 +0.5
5,745,504 - BT4358 0.26 -1.0
5,745,508 + BT4358 0.27 -0.0
5,745,509 - BT4358 0.27 -0.7
5,745,582 - BT4358 0.30 -2.0
5,745,673 - BT4358 0.35 -0.0
5,745,718 - BT4358 0.38 -1.4
5,745,749 - BT4358 0.39 -1.2
5,745,830 - BT4358 0.44 -1.3
5,745,830 - BT4358 0.44 -2.5
5,745,850 - BT4358 0.45 +1.0
5,745,922 + BT4358 0.48 -0.4
5,745,923 - BT4358 0.49 -0.0
5,745,930 + BT4358 0.49 -0.0
5,745,965 - BT4358 0.51 +0.4

Or see this region's nucleotide sequence