Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_897 and HP15_898 are separated by 21 nucleotides HP15_898 and HP15_899 are separated by 73 nucleotides HP15_899 and HP15_900 are separated by 12 nucleotides HP15_900 and HP15_901 are separated by 66 nucleotides
HP15_897: HP15_897 - protein containing forkhead-associated domain, at 911,597 to 911,947
_897
HP15_898: HP15_898 - glutamine amidotransferase class-I, at 911,969 to 912,679
_898
HP15_899: HP15_899 - protein YeeN, at 912,753 to 913,478
_899
HP15_900: HP15_900 - hypothetical protein, at 913,491 to 913,652
_900
HP15_901: HP15_901 - TPR repeat, SEL1 subfamily protein-like protein, at 913,719 to 914,300
_901
Position (kb) 912
913
914 Strain fitness (log2 ratio) -1
0
1 at 912.143 kb on - strand, within HP15_898 at 912.184 kb on - strand, within HP15_898 at 912.317 kb on + strand, within HP15_898 at 912.367 kb on - strand, within HP15_898 at 912.369 kb on + strand, within HP15_898 at 912.496 kb on + strand, within HP15_898 at 912.598 kb on + strand, within HP15_898 at 913.088 kb on - strand, within HP15_899 at 913.102 kb on + strand, within HP15_899 at 913.161 kb on + strand, within HP15_899 at 913.223 kb on - strand, within HP15_899 at 913.261 kb on + strand, within HP15_899 at 913.269 kb on - strand, within HP15_899 at 913.312 kb on + strand, within HP15_899 at 913.348 kb on - strand, within HP15_899 at 913.350 kb on + strand, within HP15_899 at 913.406 kb on - strand at 913.416 kb on - strand at 913.558 kb on + strand, within HP15_900 at 913.627 kb on - strand, within HP15_900 at 913.660 kb on + strand at 913.815 kb on - strand, within HP15_901 at 913.900 kb on - strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 914.053 kb on - strand, within HP15_901 at 914.215 kb on + strand, within HP15_901 at 914.241 kb on + strand, within HP15_901 at 914.383 kb on + strand at 914.407 kb on - strand at 914.419 kb on - strand at 914.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 912,143 - HP15_898 0.24 -0.3 912,184 - HP15_898 0.30 +0.6 912,317 + HP15_898 0.49 +0.1 912,367 - HP15_898 0.56 +0.1 912,369 + HP15_898 0.56 -1.1 912,496 + HP15_898 0.74 -0.9 912,598 + HP15_898 0.88 +1.1 913,088 - HP15_899 0.46 -0.0 913,102 + HP15_899 0.48 -0.1 913,161 + HP15_899 0.56 +1.1 913,223 - HP15_899 0.65 +0.0 913,261 + HP15_899 0.70 -1.3 913,269 - HP15_899 0.71 +0.7 913,312 + HP15_899 0.77 +0.0 913,348 - HP15_899 0.82 +1.1 913,350 + HP15_899 0.82 +1.3 913,406 - +0.6 913,416 - +0.1 913,558 + HP15_900 0.41 -0.7 913,627 - HP15_900 0.84 +0.5 913,660 + -0.2 913,815 - HP15_901 0.16 -0.6 913,900 - HP15_901 0.31 +0.1 913,933 + HP15_901 0.37 +1.3 913,933 + HP15_901 0.37 -0.3 914,053 - HP15_901 0.57 -1.6 914,215 + HP15_901 0.85 -0.3 914,241 + HP15_901 0.90 +0.2 914,383 + -0.1 914,407 - -0.8 914,419 - +0.2 914,424 - -1.0
Or see this region's nucleotide sequence