Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_804 and HP15_805 are separated by 48 nucleotides HP15_805 and HP15_806 are separated by 158 nucleotides HP15_806 and HP15_807 are separated by 24 nucleotides
HP15_804: HP15_804 - protein containing DUF470, at 819,656 to 820,663
_804
HP15_805: HP15_805 - methylase involved in ubiquinone/menaquinone biosynthesis, at 820,712 to 821,440
_805
HP15_806: HP15_806 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 821,599 to 823,773
_806
HP15_807: HP15_807 - histidine kinase, at 823,798 to 825,783
_807
Position (kb) 821
822
823
824 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.616 kb on + strand at 820.616 kb on + strand at 820.616 kb on + strand at 820.624 kb on - strand at 820.626 kb on - strand at 820.627 kb on + strand at 820.640 kb on - strand at 820.640 kb on - strand at 820.710 kb on + strand at 820.800 kb on - strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.855 kb on + strand, within HP15_805 at 821.027 kb on + strand, within HP15_805 at 821.176 kb on + strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.490 kb on + strand at 821.688 kb on + strand at 821.887 kb on - strand, within HP15_806 at 821.901 kb on - strand, within HP15_806 at 822.038 kb on + strand, within HP15_806 at 822.120 kb on + strand, within HP15_806 at 822.184 kb on + strand, within HP15_806 at 822.241 kb on - strand, within HP15_806 at 822.310 kb on + strand, within HP15_806 at 822.353 kb on - strand, within HP15_806 at 822.462 kb on - strand, within HP15_806 at 822.561 kb on + strand, within HP15_806 at 822.653 kb on - strand, within HP15_806 at 822.677 kb on + strand, within HP15_806 at 822.861 kb on + strand, within HP15_806 at 822.942 kb on + strand, within HP15_806 at 823.015 kb on + strand, within HP15_806 at 823.108 kb on - strand, within HP15_806 at 823.128 kb on - strand, within HP15_806 at 823.131 kb on - strand, within HP15_806 at 823.140 kb on - strand, within HP15_806 at 823.166 kb on - strand, within HP15_806 at 823.328 kb on - strand, within HP15_806 at 823.425 kb on - strand, within HP15_806 at 823.465 kb on + strand, within HP15_806 at 823.472 kb on + strand, within HP15_806 at 823.473 kb on - strand, within HP15_806 at 823.652 kb on + strand at 823.691 kb on - strand at 823.693 kb on - strand at 823.749 kb on + strand at 823.755 kb on - strand at 823.834 kb on + strand at 823.979 kb on + strand at 823.979 kb on + strand at 823.979 kb on + strand at 823.979 kb on + strand at 823.979 kb on + strand at 823.987 kb on - strand at 823.987 kb on - strand at 823.987 kb on - strand at 823.987 kb on - strand at 824.057 kb on + strand, within HP15_807 at 824.193 kb on + strand, within HP15_807 at 824.193 kb on + strand, within HP15_807 at 824.201 kb on - strand, within HP15_807 at 824.208 kb on + strand, within HP15_807 at 824.218 kb on + strand, within HP15_807 at 824.289 kb on + strand, within HP15_807 at 824.495 kb on - strand, within HP15_807 at 824.526 kb on - strand, within HP15_807 at 824.540 kb on + strand, within HP15_807 at 824.569 kb on - strand, within HP15_807 at 824.580 kb on + strand, within HP15_807 at 824.580 kb on + strand, within HP15_807 at 824.580 kb on + strand, within HP15_807 at 824.588 kb on - strand, within HP15_807 at 824.617 kb on - strand, within HP15_807 at 824.628 kb on + strand, within HP15_807 at 824.636 kb on - strand, within HP15_807 at 824.636 kb on - strand, within HP15_807 at 824.636 kb on - strand, within HP15_807 at 824.641 kb on - strand, within HP15_807 at 824.692 kb on + strand, within HP15_807 at 824.714 kb on + strand, within HP15_807 at 824.714 kb on + strand, within HP15_807 at 824.735 kb on - strand, within HP15_807 at 824.763 kb on + strand, within HP15_807
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 820,616 + +1.9 820,616 + -0.0 820,616 + -0.5 820,624 - +0.1 820,626 - +0.8 820,627 + -0.1 820,640 - -0.6 820,640 - -0.4 820,710 + +0.1 820,800 - HP15_805 0.12 -0.7 820,820 + HP15_805 0.15 +0.5 820,820 + HP15_805 0.15 +1.6 820,855 + HP15_805 0.20 -0.3 821,027 + HP15_805 0.43 -0.3 821,176 + HP15_805 0.64 -0.6 821,184 - HP15_805 0.65 -0.4 821,184 - HP15_805 0.65 +0.9 821,490 + -0.6 821,688 + -0.4 821,887 - HP15_806 0.13 +1.1 821,901 - HP15_806 0.14 +0.0 822,038 + HP15_806 0.20 +0.4 822,120 + HP15_806 0.24 -0.3 822,184 + HP15_806 0.27 -0.6 822,241 - HP15_806 0.30 +1.3 822,310 + HP15_806 0.33 -0.8 822,353 - HP15_806 0.35 +0.4 822,462 - HP15_806 0.40 -1.7 822,561 + HP15_806 0.44 -0.3 822,653 - HP15_806 0.48 -1.3 822,677 + HP15_806 0.50 +0.6 822,861 + HP15_806 0.58 -0.3 822,942 + HP15_806 0.62 +1.2 823,015 + HP15_806 0.65 -0.5 823,108 - HP15_806 0.69 -0.6 823,128 - HP15_806 0.70 +0.7 823,131 - HP15_806 0.70 +1.1 823,140 - HP15_806 0.71 -0.3 823,166 - HP15_806 0.72 -0.4 823,328 - HP15_806 0.79 +2.2 823,425 - HP15_806 0.84 +1.7 823,465 + HP15_806 0.86 +1.1 823,472 + HP15_806 0.86 +1.1 823,473 - HP15_806 0.86 +1.9 823,652 + -0.7 823,691 - +1.1 823,693 - +0.1 823,749 + +0.1 823,755 - -0.4 823,834 + -0.7 823,979 + -0.5 823,979 + -0.2 823,979 + -0.2 823,979 + +1.3 823,979 + -1.4 823,987 - -1.2 823,987 - -1.3 823,987 - -1.7 823,987 - -0.3 824,057 + HP15_807 0.13 -1.5 824,193 + HP15_807 0.20 -0.6 824,193 + HP15_807 0.20 +0.1 824,201 - HP15_807 0.20 -0.4 824,208 + HP15_807 0.21 +1.0 824,218 + HP15_807 0.21 +0.1 824,289 + HP15_807 0.25 +0.9 824,495 - HP15_807 0.35 +1.1 824,526 - HP15_807 0.37 -1.0 824,540 + HP15_807 0.37 -0.4 824,569 - HP15_807 0.39 -1.8 824,580 + HP15_807 0.39 -0.2 824,580 + HP15_807 0.39 +0.8 824,580 + HP15_807 0.39 -0.2 824,588 - HP15_807 0.40 -0.4 824,617 - HP15_807 0.41 -0.5 824,628 + HP15_807 0.42 +2.2 824,636 - HP15_807 0.42 +1.2 824,636 - HP15_807 0.42 -1.8 824,636 - HP15_807 0.42 +0.8 824,641 - HP15_807 0.42 -1.0 824,692 + HP15_807 0.45 +0.8 824,714 + HP15_807 0.46 +1.0 824,714 + HP15_807 0.46 +1.5 824,735 - HP15_807 0.47 -0.8 824,763 + HP15_807 0.49 -0.6
Or see this region's nucleotide sequence