Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g97 and HP15_p187g98 are separated by 60 nucleotides HP15_p187g98 and HP15_p187g99 are separated by 59 nucleotides HP15_p187g99 and HP15_p187g100 are separated by 172 nucleotides HP15_p187g100 and HP15_p187g101 overlap by 4 nucleotides
HP15_p187g97: HP15_p187g97 - sodium/solute symporter-like protein, at 91,436 to 92,797
_p187g97
HP15_p187g98: HP15_p187g98 - hypothetical protein, at 92,858 to 92,974
_p187g98
HP15_p187g99: HP15_p187g99 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 93,034 to 94,338
_p187g99
HP15_p187g100: HP15_p187g100 - RNA polymerase sigma factor, at 94,511 to 95,080
_p187g100
HP15_p187g101: HP15_p187g101 - conserved hypothetical protein, at 95,077 to 95,805
_p187g101
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.088 kb on - strand, within HP15_p187g97 at 92.207 kb on - strand, within HP15_p187g97 at 92.224 kb on - strand, within HP15_p187g97 at 92.231 kb on - strand, within HP15_p187g97 at 92.269 kb on + strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.277 kb on - strand, within HP15_p187g97 at 92.293 kb on - strand, within HP15_p187g97 at 92.298 kb on - strand, within HP15_p187g97 at 92.306 kb on + strand, within HP15_p187g97 at 92.307 kb on + strand, within HP15_p187g97 at 92.426 kb on - strand, within HP15_p187g97 at 92.436 kb on - strand, within HP15_p187g97 at 92.436 kb on - strand, within HP15_p187g97 at 92.436 kb on - strand, within HP15_p187g97 at 92.445 kb on - strand, within HP15_p187g97 at 92.524 kb on - strand, within HP15_p187g97 at 92.568 kb on + strand, within HP15_p187g97 at 92.575 kb on + strand, within HP15_p187g97 at 92.623 kb on + strand, within HP15_p187g97 at 92.631 kb on - strand, within HP15_p187g97 at 92.662 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.663 kb on - strand at 92.667 kb on - strand at 92.689 kb on + strand at 92.706 kb on - strand at 92.729 kb on + strand at 92.755 kb on + strand at 92.761 kb on + strand at 92.828 kb on + strand at 92.922 kb on - strand, within HP15_p187g98 at 92.926 kb on + strand, within HP15_p187g98 at 92.929 kb on - strand, within HP15_p187g98 at 92.929 kb on - strand, within HP15_p187g98 at 92.974 kb on + strand at 92.982 kb on - strand at 93.002 kb on + strand at 93.008 kb on + strand at 93.008 kb on + strand at 93.011 kb on - strand at 93.016 kb on - strand at 93.018 kb on + strand at 93.018 kb on + strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.026 kb on - strand at 93.084 kb on - strand at 93.087 kb on + strand at 93.095 kb on - strand at 93.095 kb on - strand at 93.097 kb on + strand at 93.097 kb on + strand at 93.105 kb on - strand at 93.109 kb on + strand at 93.117 kb on - strand at 93.119 kb on + strand at 93.136 kb on - strand at 93.240 kb on + strand, within HP15_p187g99 at 93.264 kb on + strand, within HP15_p187g99 at 93.286 kb on - strand, within HP15_p187g99 at 93.316 kb on + strand, within HP15_p187g99 at 93.394 kb on + strand, within HP15_p187g99 at 93.407 kb on - strand, within HP15_p187g99 at 93.423 kb on - strand, within HP15_p187g99 at 93.425 kb on - strand, within HP15_p187g99 at 93.426 kb on + strand, within HP15_p187g99 at 93.530 kb on - strand, within HP15_p187g99 at 93.712 kb on + strand, within HP15_p187g99 at 93.720 kb on - strand, within HP15_p187g99 at 93.752 kb on - strand, within HP15_p187g99 at 93.792 kb on - strand, within HP15_p187g99 at 93.792 kb on - strand, within HP15_p187g99 at 93.801 kb on + strand, within HP15_p187g99 at 93.801 kb on + strand, within HP15_p187g99 at 93.801 kb on + strand, within HP15_p187g99 at 93.809 kb on - strand, within HP15_p187g99 at 93.809 kb on - strand, within HP15_p187g99 at 93.814 kb on - strand, within HP15_p187g99 at 93.816 kb on + strand, within HP15_p187g99 at 93.824 kb on + strand, within HP15_p187g99 at 93.824 kb on + strand, within HP15_p187g99 at 93.824 kb on + strand, within HP15_p187g99 at 93.832 kb on - strand, within HP15_p187g99 at 93.832 kb on - strand, within HP15_p187g99 at 93.832 kb on - strand, within HP15_p187g99 at 93.837 kb on - strand, within HP15_p187g99 at 93.852 kb on + strand, within HP15_p187g99 at 93.869 kb on + strand, within HP15_p187g99 at 93.870 kb on - strand, within HP15_p187g99 at 93.890 kb on + strand, within HP15_p187g99 at 93.935 kb on - strand, within HP15_p187g99 at 93.945 kb on + strand, within HP15_p187g99 at 93.959 kb on + strand, within HP15_p187g99 at 93.965 kb on + strand, within HP15_p187g99 at 93.972 kb on - strand, within HP15_p187g99 at 93.973 kb on - strand, within HP15_p187g99 at 94.007 kb on - strand, within HP15_p187g99 at 94.009 kb on - strand, within HP15_p187g99 at 94.013 kb on + strand, within HP15_p187g99 at 94.021 kb on - strand, within HP15_p187g99 at 94.038 kb on - strand, within HP15_p187g99 at 94.120 kb on + strand, within HP15_p187g99 at 94.133 kb on - strand, within HP15_p187g99 at 94.135 kb on - strand, within HP15_p187g99 at 94.135 kb on - strand, within HP15_p187g99 at 94.142 kb on + strand, within HP15_p187g99 at 94.169 kb on - strand, within HP15_p187g99 at 94.171 kb on - strand, within HP15_p187g99 at 94.174 kb on + strand, within HP15_p187g99 at 94.182 kb on - strand, within HP15_p187g99 at 94.182 kb on - strand, within HP15_p187g99 at 94.231 kb on + strand at 94.239 kb on - strand at 94.245 kb on - strand at 94.247 kb on + strand at 94.317 kb on + strand at 94.325 kb on - strand at 94.325 kb on - strand at 94.325 kb on - strand at 94.365 kb on - strand at 94.416 kb on + strand at 94.456 kb on - strand at 94.497 kb on + strand at 94.558 kb on + strand at 94.559 kb on + strand at 94.582 kb on + strand, within HP15_p187g100 at 94.603 kb on + strand, within HP15_p187g100 at 94.611 kb on - strand, within HP15_p187g100 at 94.656 kb on + strand, within HP15_p187g100 at 94.668 kb on + strand, within HP15_p187g100 at 94.668 kb on + strand, within HP15_p187g100 at 94.668 kb on + strand, within HP15_p187g100 at 94.676 kb on - strand, within HP15_p187g100 at 94.676 kb on - strand, within HP15_p187g100 at 94.717 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.727 kb on - strand, within HP15_p187g100 at 94.727 kb on - strand, within HP15_p187g100 at 94.753 kb on + strand, within HP15_p187g100 at 94.769 kb on - strand, within HP15_p187g100 at 94.784 kb on + strand, within HP15_p187g100 at 94.792 kb on - strand, within HP15_p187g100 at 94.835 kb on + strand, within HP15_p187g100 at 94.841 kb on + strand, within HP15_p187g100 at 94.849 kb on - strand, within HP15_p187g100 at 94.863 kb on - strand, within HP15_p187g100 at 94.894 kb on - strand, within HP15_p187g100 at 94.934 kb on + strand, within HP15_p187g100 at 94.944 kb on + strand, within HP15_p187g100 at 94.975 kb on + strand, within HP15_p187g100 at 94.983 kb on + strand, within HP15_p187g100 at 94.983 kb on + strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 95.015 kb on + strand, within HP15_p187g100 at 95.020 kb on + strand, within HP15_p187g100 at 95.049 kb on + strand at 95.057 kb on - strand at 95.057 kb on - strand at 95.057 kb on - strand at 95.115 kb on + strand at 95.116 kb on + strand at 95.121 kb on + strand at 95.121 kb on + strand at 95.129 kb on + strand at 95.140 kb on + strand at 95.142 kb on + strand at 95.148 kb on - strand at 95.148 kb on - strand at 95.150 kb on - strand, within HP15_p187g101 at 95.186 kb on + strand, within HP15_p187g101 at 95.236 kb on + strand, within HP15_p187g101 at 95.246 kb on + strand, within HP15_p187g101 at 95.277 kb on - strand, within HP15_p187g101 at 95.317 kb on + strand, within HP15_p187g101 at 95.334 kb on - strand, within HP15_p187g101 at 95.334 kb on - strand, within HP15_p187g101
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 92,088 - HP15_p187g97 0.48 -0.6 92,207 - HP15_p187g97 0.57 -0.3 92,224 - HP15_p187g97 0.58 -0.2 92,231 - HP15_p187g97 0.58 +0.7 92,269 + HP15_p187g97 0.61 -0.3 92,277 - HP15_p187g97 0.62 -2.1 92,277 - HP15_p187g97 0.62 +2.5 92,277 - HP15_p187g97 0.62 +0.9 92,277 - HP15_p187g97 0.62 +0.2 92,293 - HP15_p187g97 0.63 -0.1 92,298 - HP15_p187g97 0.63 +2.1 92,306 + HP15_p187g97 0.64 -0.6 92,307 + HP15_p187g97 0.64 -1.1 92,426 - HP15_p187g97 0.73 -1.1 92,436 - HP15_p187g97 0.73 +0.3 92,436 - HP15_p187g97 0.73 -0.2 92,436 - HP15_p187g97 0.73 +1.2 92,445 - HP15_p187g97 0.74 +0.0 92,524 - HP15_p187g97 0.80 -0.9 92,568 + HP15_p187g97 0.83 -0.3 92,575 + HP15_p187g97 0.84 +0.7 92,623 + HP15_p187g97 0.87 -0.5 92,631 - HP15_p187g97 0.88 -0.2 92,662 - -0.6 92,663 - -0.4 92,663 - +0.9 92,663 - +0.0 92,663 - +1.4 92,663 - +1.6 92,663 - -0.3 92,667 - -1.0 92,689 + -0.0 92,706 - -0.1 92,729 + +0.3 92,755 + -0.6 92,761 + -1.0 92,828 + +0.0 92,922 - HP15_p187g98 0.55 +0.1 92,926 + HP15_p187g98 0.58 -0.2 92,929 - HP15_p187g98 0.61 +0.8 92,929 - HP15_p187g98 0.61 +0.2 92,974 + +0.8 92,982 - +0.5 93,002 + +0.1 93,008 + +0.6 93,008 + +0.0 93,011 - -0.0 93,016 - +0.6 93,018 + -1.6 93,018 + +1.1 93,026 - +0.5 93,026 - -0.1 93,026 - +1.0 93,026 - +0.4 93,026 - -1.5 93,084 - +0.4 93,087 + +0.7 93,095 - +1.2 93,095 - +1.2 93,097 + +0.7 93,097 + +0.1 93,105 - +0.7 93,109 + +1.1 93,117 - +0.4 93,119 + +1.4 93,136 - +1.5 93,240 + HP15_p187g99 0.16 +1.4 93,264 + HP15_p187g99 0.18 +0.4 93,286 - HP15_p187g99 0.19 +0.8 93,316 + HP15_p187g99 0.22 +1.6 93,394 + HP15_p187g99 0.28 +0.5 93,407 - HP15_p187g99 0.29 -0.9 93,423 - HP15_p187g99 0.30 +0.8 93,425 - HP15_p187g99 0.30 +1.2 93,426 + HP15_p187g99 0.30 +0.4 93,530 - HP15_p187g99 0.38 +1.3 93,712 + HP15_p187g99 0.52 +0.3 93,720 - HP15_p187g99 0.53 +0.3 93,752 - HP15_p187g99 0.55 +0.5 93,792 - HP15_p187g99 0.58 +1.2 93,792 - HP15_p187g99 0.58 +1.0 93,801 + HP15_p187g99 0.59 +0.0 93,801 + HP15_p187g99 0.59 +0.4 93,801 + HP15_p187g99 0.59 +1.1 93,809 - HP15_p187g99 0.59 +1.6 93,809 - HP15_p187g99 0.59 +0.4 93,814 - HP15_p187g99 0.60 -0.4 93,816 + HP15_p187g99 0.60 -0.1 93,824 + HP15_p187g99 0.61 +0.3 93,824 + HP15_p187g99 0.61 +1.3 93,824 + HP15_p187g99 0.61 +0.6 93,832 - HP15_p187g99 0.61 +0.4 93,832 - HP15_p187g99 0.61 +0.2 93,832 - HP15_p187g99 0.61 -0.0 93,837 - HP15_p187g99 0.62 +1.5 93,852 + HP15_p187g99 0.63 +0.6 93,869 + HP15_p187g99 0.64 +0.0 93,870 - HP15_p187g99 0.64 +0.7 93,890 + HP15_p187g99 0.66 -1.0 93,935 - HP15_p187g99 0.69 +1.3 93,945 + HP15_p187g99 0.70 +1.1 93,959 + HP15_p187g99 0.71 +0.5 93,965 + HP15_p187g99 0.71 +1.0 93,972 - HP15_p187g99 0.72 +1.4 93,973 - HP15_p187g99 0.72 +1.1 94,007 - HP15_p187g99 0.75 +0.3 94,009 - HP15_p187g99 0.75 +0.8 94,013 + HP15_p187g99 0.75 +0.6 94,021 - HP15_p187g99 0.76 -0.1 94,038 - HP15_p187g99 0.77 -0.3 94,120 + HP15_p187g99 0.83 +0.6 94,133 - HP15_p187g99 0.84 +1.0 94,135 - HP15_p187g99 0.84 +1.8 94,135 - HP15_p187g99 0.84 +0.5 94,142 + HP15_p187g99 0.85 -0.3 94,169 - HP15_p187g99 0.87 -0.2 94,171 - HP15_p187g99 0.87 -0.8 94,174 + HP15_p187g99 0.87 +0.7 94,182 - HP15_p187g99 0.88 +0.2 94,182 - HP15_p187g99 0.88 +1.4 94,231 + +0.9 94,239 - -0.3 94,245 - +1.1 94,247 + +0.6 94,317 + -0.2 94,325 - +1.5 94,325 - -0.1 94,325 - +0.0 94,365 - -0.4 94,416 + -0.5 94,456 - -0.3 94,497 + -0.0 94,558 + -0.7 94,559 + +0.0 94,582 + HP15_p187g100 0.12 +0.0 94,603 + HP15_p187g100 0.16 -0.8 94,611 - HP15_p187g100 0.18 +0.8 94,656 + HP15_p187g100 0.25 -0.4 94,668 + HP15_p187g100 0.28 +0.2 94,668 + HP15_p187g100 0.28 -0.0 94,668 + HP15_p187g100 0.28 +0.4 94,676 - HP15_p187g100 0.29 -2.0 94,676 - HP15_p187g100 0.29 +1.0 94,717 + HP15_p187g100 0.36 -0.1 94,719 + HP15_p187g100 0.36 -1.2 94,719 + HP15_p187g100 0.36 +0.0 94,719 + HP15_p187g100 0.36 +0.4 94,719 + HP15_p187g100 0.36 -0.0 94,719 + HP15_p187g100 0.36 +0.9 94,727 - HP15_p187g100 0.38 -0.7 94,727 - HP15_p187g100 0.38 -0.3 94,753 + HP15_p187g100 0.42 +0.0 94,769 - HP15_p187g100 0.45 -0.6 94,784 + HP15_p187g100 0.48 +1.1 94,792 - HP15_p187g100 0.49 +0.9 94,835 + HP15_p187g100 0.57 +0.8 94,841 + HP15_p187g100 0.58 +0.9 94,849 - HP15_p187g100 0.59 -1.4 94,863 - HP15_p187g100 0.62 +1.1 94,894 - HP15_p187g100 0.67 -0.2 94,934 + HP15_p187g100 0.74 +0.2 94,944 + HP15_p187g100 0.76 -0.3 94,975 + HP15_p187g100 0.81 -0.5 94,983 + HP15_p187g100 0.83 +1.8 94,983 + HP15_p187g100 0.83 -1.3 94,991 - HP15_p187g100 0.84 -0.5 94,991 - HP15_p187g100 0.84 +1.1 94,991 - HP15_p187g100 0.84 -1.5 94,991 - HP15_p187g100 0.84 -0.5 94,991 - HP15_p187g100 0.84 -0.4 94,991 - HP15_p187g100 0.84 -0.2 94,991 - HP15_p187g100 0.84 +1.3 95,015 + HP15_p187g100 0.88 -0.5 95,020 + HP15_p187g100 0.89 -0.5 95,049 + +0.4 95,057 - +0.0 95,057 - +0.7 95,057 - +0.3 95,115 + +0.1 95,116 + -1.3 95,121 + +1.1 95,121 + -0.6 95,129 + -0.8 95,140 + +1.9 95,142 + -1.8 95,148 - -0.3 95,148 - -1.0 95,150 - HP15_p187g101 0.10 +0.0 95,186 + HP15_p187g101 0.15 -0.6 95,236 + HP15_p187g101 0.22 +0.9 95,246 + HP15_p187g101 0.23 +0.8 95,277 - HP15_p187g101 0.27 +0.6 95,317 + HP15_p187g101 0.33 -1.2 95,334 - HP15_p187g101 0.35 +1.1 95,334 - HP15_p187g101 0.35 -0.4
Or see this region's nucleotide sequence