Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g80 and HP15_p187g81 are separated by 41 nucleotides HP15_p187g81 and HP15_p187g82 are separated by 260 nucleotides
HP15_p187g80: HP15_p187g80 - hypothetical protein, at 76,636 to 78,234
_p187g80
HP15_p187g81: HP15_p187g81 - secreted protein containing outer membrane protein, OmpA/MotB, C-terminal domain, at 78,276 to 79,376
_p187g81
HP15_p187g82: HP15_p187g82 - uncharacterized conserved protein, at 79,637 to 80,476
_p187g82
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 77.282 kb on - strand, within HP15_p187g80 at 77.298 kb on + strand, within HP15_p187g80 at 77.306 kb on - strand, within HP15_p187g80 at 77.308 kb on + strand, within HP15_p187g80 at 77.308 kb on + strand, within HP15_p187g80 at 77.316 kb on - strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.367 kb on + strand, within HP15_p187g80 at 77.376 kb on - strand, within HP15_p187g80 at 77.463 kb on - strand, within HP15_p187g80 at 77.463 kb on - strand, within HP15_p187g80 at 77.493 kb on + strand, within HP15_p187g80 at 77.493 kb on + strand, within HP15_p187g80 at 77.493 kb on + strand, within HP15_p187g80 at 77.493 kb on - strand, within HP15_p187g80 at 77.501 kb on - strand, within HP15_p187g80 at 77.561 kb on - strand, within HP15_p187g80 at 77.571 kb on - strand, within HP15_p187g80 at 77.576 kb on - strand, within HP15_p187g80 at 77.642 kb on - strand, within HP15_p187g80 at 77.647 kb on + strand, within HP15_p187g80 at 77.650 kb on - strand, within HP15_p187g80 at 77.661 kb on + strand, within HP15_p187g80 at 77.661 kb on - strand, within HP15_p187g80 at 77.730 kb on - strand, within HP15_p187g80 at 77.753 kb on + strand, within HP15_p187g80 at 77.753 kb on + strand, within HP15_p187g80 at 77.758 kb on + strand, within HP15_p187g80 at 77.758 kb on + strand, within HP15_p187g80 at 77.761 kb on - strand, within HP15_p187g80 at 77.761 kb on - strand at 77.761 kb on - strand, within HP15_p187g80 at 77.761 kb on - strand, within HP15_p187g80 at 77.761 kb on - strand, within HP15_p187g80 at 77.763 kb on + strand, within HP15_p187g80 at 77.763 kb on + strand, within HP15_p187g80 at 77.768 kb on - strand, within HP15_p187g80 at 77.816 kb on - strand, within HP15_p187g80 at 77.876 kb on + strand, within HP15_p187g80 at 77.882 kb on + strand, within HP15_p187g80 at 77.890 kb on - strand, within HP15_p187g80 at 77.969 kb on + strand, within HP15_p187g80 at 77.999 kb on + strand, within HP15_p187g80 at 78.022 kb on + strand, within HP15_p187g80 at 78.027 kb on + strand, within HP15_p187g80 at 78.027 kb on + strand, within HP15_p187g80 at 78.032 kb on + strand, within HP15_p187g80 at 78.048 kb on - strand, within HP15_p187g80 at 78.059 kb on - strand, within HP15_p187g80 at 78.091 kb on + strand at 78.091 kb on + strand at 78.096 kb on + strand at 78.099 kb on - strand at 78.104 kb on - strand at 78.104 kb on - strand at 78.142 kb on - strand at 78.178 kb on + strand at 78.201 kb on - strand at 78.201 kb on - strand at 78.201 kb on - strand at 78.201 kb on - strand at 78.201 kb on - strand at 78.201 kb on - strand at 78.225 kb on - strand at 78.230 kb on + strand at 78.346 kb on + strand at 78.351 kb on + strand at 78.351 kb on + strand at 78.359 kb on - strand at 78.359 kb on - strand at 78.359 kb on - strand at 78.359 kb on - strand at 78.374 kb on - strand at 78.479 kb on + strand, within HP15_p187g81 at 78.505 kb on + strand, within HP15_p187g81 at 78.505 kb on + strand, within HP15_p187g81 at 78.541 kb on + strand, within HP15_p187g81 at 78.551 kb on + strand, within HP15_p187g81 at 78.551 kb on - strand, within HP15_p187g81 at 78.560 kb on + strand, within HP15_p187g81 at 78.583 kb on + strand, within HP15_p187g81 at 78.591 kb on - strand, within HP15_p187g81 at 78.595 kb on + strand, within HP15_p187g81 at 78.679 kb on + strand, within HP15_p187g81 at 78.682 kb on - strand, within HP15_p187g81 at 78.682 kb on - strand, within HP15_p187g81 at 78.736 kb on - strand, within HP15_p187g81 at 78.778 kb on + strand, within HP15_p187g81 at 78.778 kb on + strand, within HP15_p187g81 at 78.778 kb on + strand, within HP15_p187g81 at 78.778 kb on + strand, within HP15_p187g81 at 78.783 kb on + strand, within HP15_p187g81 at 78.786 kb on - strand, within HP15_p187g81 at 78.786 kb on - strand, within HP15_p187g81 at 78.786 kb on - strand, within HP15_p187g81 at 78.855 kb on + strand, within HP15_p187g81 at 78.863 kb on - strand, within HP15_p187g81 at 78.868 kb on + strand, within HP15_p187g81 at 78.868 kb on + strand, within HP15_p187g81 at 78.868 kb on + strand, within HP15_p187g81 at 78.876 kb on - strand, within HP15_p187g81 at 78.876 kb on - strand, within HP15_p187g81 at 78.876 kb on - strand, within HP15_p187g81 at 78.876 kb on - strand, within HP15_p187g81 at 78.981 kb on - strand, within HP15_p187g81 at 78.989 kb on + strand, within HP15_p187g81 at 79.006 kb on + strand, within HP15_p187g81 at 79.011 kb on + strand, within HP15_p187g81 at 79.011 kb on + strand, within HP15_p187g81 at 79.011 kb on + strand, within HP15_p187g81 at 79.011 kb on + strand, within HP15_p187g81 at 79.019 kb on - strand, within HP15_p187g81 at 79.019 kb on - strand, within HP15_p187g81 at 79.019 kb on - strand, within HP15_p187g81 at 79.019 kb on - strand, within HP15_p187g81 at 79.065 kb on + strand, within HP15_p187g81 at 79.073 kb on - strand, within HP15_p187g81 at 79.095 kb on - strand, within HP15_p187g81 at 79.146 kb on - strand, within HP15_p187g81 at 79.151 kb on + strand, within HP15_p187g81 at 79.152 kb on - strand, within HP15_p187g81 at 79.156 kb on + strand, within HP15_p187g81 at 79.159 kb on - strand, within HP15_p187g81 at 79.164 kb on - strand, within HP15_p187g81 at 79.196 kb on - strand, within HP15_p187g81 at 79.196 kb on - strand, within HP15_p187g81 at 79.226 kb on - strand, within HP15_p187g81 at 79.267 kb on - strand at 79.271 kb on + strand at 79.271 kb on + strand at 79.272 kb on - strand at 79.277 kb on - strand at 79.291 kb on - strand at 79.305 kb on + strand at 79.318 kb on + strand at 79.366 kb on + strand at 79.473 kb on - strand at 79.503 kb on + strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.521 kb on - strand at 79.521 kb on - strand at 79.535 kb on + strand at 79.552 kb on + strand at 79.557 kb on - strand at 79.580 kb on + strand at 79.582 kb on + strand at 79.582 kb on + strand at 79.582 kb on - strand at 79.616 kb on + strand at 79.621 kb on + strand at 79.624 kb on - strand at 79.624 kb on - strand at 79.627 kb on - strand at 79.663 kb on - strand at 79.663 kb on - strand at 79.708 kb on + strand at 79.708 kb on + strand at 79.708 kb on + strand at 79.708 kb on + strand at 79.708 kb on + strand at 79.716 kb on - strand at 79.716 kb on - strand at 79.716 kb on - strand at 79.716 kb on - strand at 79.716 kb on - strand at 79.716 kb on - strand at 79.810 kb on + strand, within HP15_p187g82 at 79.818 kb on - strand, within HP15_p187g82 at 79.818 kb on - strand, within HP15_p187g82 at 79.818 kb on - strand, within HP15_p187g82 at 79.825 kb on - strand, within HP15_p187g82 at 79.826 kb on + strand, within HP15_p187g82 at 79.827 kb on + strand, within HP15_p187g82 at 79.886 kb on + strand, within HP15_p187g82 at 79.888 kb on + strand, within HP15_p187g82 at 79.888 kb on + strand, within HP15_p187g82 at 79.888 kb on + strand, within HP15_p187g82 at 79.939 kb on - strand, within HP15_p187g82 at 79.961 kb on + strand, within HP15_p187g82 at 80.014 kb on - strand, within HP15_p187g82 at 80.035 kb on + strand, within HP15_p187g82 at 80.035 kb on + strand, within HP15_p187g82 at 80.052 kb on + strand, within HP15_p187g82 at 80.055 kb on - strand, within HP15_p187g82 at 80.057 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.096 kb on - strand, within HP15_p187g82 at 80.130 kb on - strand, within HP15_p187g82 at 80.158 kb on - strand, within HP15_p187g82 at 80.174 kb on - strand, within HP15_p187g82 at 80.176 kb on + strand, within HP15_p187g82 at 80.181 kb on + strand, within HP15_p187g82 at 80.225 kb on + strand, within HP15_p187g82 at 80.242 kb on + strand, within HP15_p187g82 at 80.242 kb on + strand, within HP15_p187g82 at 80.245 kb on - strand, within HP15_p187g82 at 80.245 kb on - strand, within HP15_p187g82 at 80.341 kb on + strand, within HP15_p187g82
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 77,282 - HP15_p187g80 0.40 +0.4 77,298 + HP15_p187g80 0.41 +0.5 77,306 - HP15_p187g80 0.42 +0.1 77,308 + HP15_p187g80 0.42 -0.4 77,308 + HP15_p187g80 0.42 +1.5 77,316 - HP15_p187g80 0.43 +0.6 77,367 + HP15_p187g80 0.46 +1.1 77,367 + HP15_p187g80 0.46 +0.4 77,367 + HP15_p187g80 0.46 -0.1 77,367 + HP15_p187g80 0.46 +0.2 77,367 + HP15_p187g80 0.46 -0.4 77,376 - HP15_p187g80 0.46 +0.6 77,463 - HP15_p187g80 0.52 -2.1 77,463 - HP15_p187g80 0.52 +0.1 77,493 + HP15_p187g80 0.54 -1.5 77,493 + HP15_p187g80 0.54 +0.2 77,493 + HP15_p187g80 0.54 -0.1 77,493 - HP15_p187g80 0.54 +0.3 77,501 - HP15_p187g80 0.54 -0.1 77,561 - HP15_p187g80 0.58 +0.5 77,571 - HP15_p187g80 0.58 +0.6 77,576 - HP15_p187g80 0.59 +0.5 77,642 - HP15_p187g80 0.63 +1.3 77,647 + HP15_p187g80 0.63 +1.5 77,650 - HP15_p187g80 0.63 -0.3 77,661 + HP15_p187g80 0.64 +0.9 77,661 - HP15_p187g80 0.64 +0.7 77,730 - HP15_p187g80 0.68 +0.4 77,753 + HP15_p187g80 0.70 -0.1 77,753 + HP15_p187g80 0.70 +0.5 77,758 + HP15_p187g80 0.70 +0.7 77,758 + HP15_p187g80 0.70 +0.2 77,761 - HP15_p187g80 0.70 +0.9 77,761 - -0.1 77,761 - HP15_p187g80 0.70 +1.5 77,761 - HP15_p187g80 0.70 +1.4 77,761 - HP15_p187g80 0.70 +0.6 77,763 + HP15_p187g80 0.70 +1.2 77,763 + HP15_p187g80 0.70 -0.5 77,768 - HP15_p187g80 0.71 +0.5 77,816 - HP15_p187g80 0.74 +1.4 77,876 + HP15_p187g80 0.78 -0.1 77,882 + HP15_p187g80 0.78 +1.6 77,890 - HP15_p187g80 0.78 +0.6 77,969 + HP15_p187g80 0.83 +0.2 77,999 + HP15_p187g80 0.85 +1.1 78,022 + HP15_p187g80 0.87 +0.4 78,027 + HP15_p187g80 0.87 +0.4 78,027 + HP15_p187g80 0.87 -1.1 78,032 + HP15_p187g80 0.87 +0.0 78,048 - HP15_p187g80 0.88 +1.6 78,059 - HP15_p187g80 0.89 +0.5 78,091 + -0.9 78,091 + -0.8 78,096 + +1.2 78,099 - +0.3 78,104 - +2.6 78,104 - +0.8 78,142 - +0.8 78,178 + +1.3 78,201 - -0.4 78,201 - +0.9 78,201 - -0.2 78,201 - +0.6 78,201 - +0.8 78,201 - +0.4 78,225 - +0.7 78,230 + +0.5 78,346 + +1.3 78,351 + -0.5 78,351 + +0.9 78,359 - +0.6 78,359 - +0.5 78,359 - -1.6 78,359 - +0.8 78,374 - -0.4 78,479 + HP15_p187g81 0.18 +0.5 78,505 + HP15_p187g81 0.21 -0.2 78,505 + HP15_p187g81 0.21 -1.2 78,541 + HP15_p187g81 0.24 +0.6 78,551 + HP15_p187g81 0.25 +2.1 78,551 - HP15_p187g81 0.25 +0.7 78,560 + HP15_p187g81 0.26 +0.2 78,583 + HP15_p187g81 0.28 +0.9 78,591 - HP15_p187g81 0.29 +0.6 78,595 + HP15_p187g81 0.29 +1.2 78,679 + HP15_p187g81 0.37 +0.3 78,682 - HP15_p187g81 0.37 +0.6 78,682 - HP15_p187g81 0.37 +0.6 78,736 - HP15_p187g81 0.42 -0.0 78,778 + HP15_p187g81 0.46 +0.1 78,778 + HP15_p187g81 0.46 +1.0 78,778 + HP15_p187g81 0.46 +1.3 78,778 + HP15_p187g81 0.46 +1.0 78,783 + HP15_p187g81 0.46 +0.6 78,786 - HP15_p187g81 0.46 +0.9 78,786 - HP15_p187g81 0.46 +1.0 78,786 - HP15_p187g81 0.46 +0.4 78,855 + HP15_p187g81 0.53 +0.6 78,863 - HP15_p187g81 0.53 +1.3 78,868 + HP15_p187g81 0.54 +1.9 78,868 + HP15_p187g81 0.54 +2.4 78,868 + HP15_p187g81 0.54 -0.2 78,876 - HP15_p187g81 0.54 +1.0 78,876 - HP15_p187g81 0.54 +1.9 78,876 - HP15_p187g81 0.54 +1.1 78,876 - HP15_p187g81 0.54 +0.2 78,981 - HP15_p187g81 0.64 +1.5 78,989 + HP15_p187g81 0.65 +0.4 79,006 + HP15_p187g81 0.66 -0.1 79,011 + HP15_p187g81 0.67 +0.1 79,011 + HP15_p187g81 0.67 +1.4 79,011 + HP15_p187g81 0.67 +0.7 79,011 + HP15_p187g81 0.67 +1.2 79,019 - HP15_p187g81 0.67 +0.6 79,019 - HP15_p187g81 0.67 +0.7 79,019 - HP15_p187g81 0.67 +1.5 79,019 - HP15_p187g81 0.67 +0.8 79,065 + HP15_p187g81 0.72 +0.2 79,073 - HP15_p187g81 0.72 +0.1 79,095 - HP15_p187g81 0.74 +0.3 79,146 - HP15_p187g81 0.79 +1.9 79,151 + HP15_p187g81 0.79 +2.1 79,152 - HP15_p187g81 0.80 +0.7 79,156 + HP15_p187g81 0.80 +1.3 79,159 - HP15_p187g81 0.80 -1.6 79,164 - HP15_p187g81 0.81 +0.0 79,196 - HP15_p187g81 0.84 +0.3 79,196 - HP15_p187g81 0.84 -0.5 79,226 - HP15_p187g81 0.86 -0.5 79,267 - +0.6 79,271 + -1.3 79,271 + +0.6 79,272 - +0.5 79,277 - +0.9 79,291 - +0.3 79,305 + +1.0 79,318 + +0.7 79,366 + -0.7 79,473 - +1.0 79,503 + +1.6 79,513 + +0.3 79,513 + -0.2 79,521 - +0.4 79,521 - +1.1 79,535 + +0.2 79,552 + +0.1 79,557 - +0.3 79,580 + +1.4 79,582 + +0.0 79,582 + -1.1 79,582 - +0.4 79,616 + +1.4 79,621 + -0.0 79,624 - -0.2 79,624 - +1.2 79,627 - +0.5 79,663 - +3.2 79,663 - +0.8 79,708 + +1.3 79,708 + -0.2 79,708 + +0.4 79,708 + +0.1 79,708 + +0.7 79,716 - +2.0 79,716 - -0.5 79,716 - +0.6 79,716 - -1.9 79,716 - +0.5 79,716 - +0.6 79,810 + HP15_p187g82 0.21 +0.2 79,818 - HP15_p187g82 0.22 -0.5 79,818 - HP15_p187g82 0.22 +0.2 79,818 - HP15_p187g82 0.22 +0.0 79,825 - HP15_p187g82 0.22 +0.6 79,826 + HP15_p187g82 0.23 +1.6 79,827 + HP15_p187g82 0.23 +0.0 79,886 + HP15_p187g82 0.30 +0.7 79,888 + HP15_p187g82 0.30 +0.7 79,888 + HP15_p187g82 0.30 -0.7 79,888 + HP15_p187g82 0.30 -0.5 79,939 - HP15_p187g82 0.36 +0.4 79,961 + HP15_p187g82 0.39 +1.7 80,014 - HP15_p187g82 0.45 +0.3 80,035 + HP15_p187g82 0.47 -0.9 80,035 + HP15_p187g82 0.47 -0.2 80,052 + HP15_p187g82 0.49 +0.7 80,055 - HP15_p187g82 0.50 +0.2 80,057 - HP15_p187g82 0.50 +1.2 80,096 - HP15_p187g82 0.55 -1.0 80,096 - HP15_p187g82 0.55 +1.4 80,096 - HP15_p187g82 0.55 +2.1 80,096 - HP15_p187g82 0.55 +0.0 80,096 - HP15_p187g82 0.55 +0.2 80,096 - HP15_p187g82 0.55 +0.5 80,096 - HP15_p187g82 0.55 -1.4 80,130 - HP15_p187g82 0.59 +0.2 80,158 - HP15_p187g82 0.62 +0.0 80,174 - HP15_p187g82 0.64 -0.4 80,176 + HP15_p187g82 0.64 -0.1 80,181 + HP15_p187g82 0.65 -0.0 80,225 + HP15_p187g82 0.70 -0.5 80,242 + HP15_p187g82 0.72 -0.0 80,242 + HP15_p187g82 0.72 -0.5 80,245 - HP15_p187g82 0.72 +1.2 80,245 - HP15_p187g82 0.72 +0.6 80,341 + HP15_p187g82 0.84 +2.2
Or see this region's nucleotide sequence