Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g7 and HP15_p42g8 overlap by 8 nucleotides HP15_p42g8 and HP15_p42g9 are separated by 106 nucleotides HP15_p42g9 and HP15_p42g10 are separated by 132 nucleotides HP15_p42g10 and HP15_p42g11 are separated by 94 nucleotides HP15_p42g11 and HP15_p42g12 overlap by 1 nucleotides
HP15_p42g7: HP15_p42g7 - klcB-like protein, at 4,866 to 5,933
_p42g7
HP15_p42g8: HP15_p42g8 - transcriptional repressor korC-like protein, at 5,926 to 6,180
_p42g8
HP15_p42g9: HP15_p42g9 - kleC-like protein, at 6,287 to 6,568
_p42g9
HP15_p42g10: HP15_p42g10 - KleE protein, at 6,701 to 7,051
_p42g10
HP15_p42g11: HP15_p42g11 - transcriptional repressor protein KorA, at 7,146 to 7,466
_p42g11
HP15_p42g12: HP15_p42g12 - Cobyrinic acid a,c-diamide synthase, at 7,466 to 8,224
_p42g12
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1
2 at 5.732 kb on + strand, within HP15_p42g7 at 5.740 kb on - strand, within HP15_p42g7 at 5.768 kb on + strand, within HP15_p42g7 at 5.776 kb on + strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.805 kb on - strand, within HP15_p42g7 at 5.831 kb on - strand at 5.852 kb on - strand at 5.863 kb on - strand at 5.881 kb on + strand at 5.881 kb on - strand at 5.882 kb on - strand at 5.909 kb on - strand at 6.182 kb on - strand at 6.313 kb on - strand at 6.319 kb on - strand, within HP15_p42g9 at 6.442 kb on - strand, within HP15_p42g9 at 6.700 kb on - strand at 6.781 kb on + strand, within HP15_p42g10 at 6.880 kb on - strand, within HP15_p42g10 at 6.946 kb on - strand, within HP15_p42g10 at 6.979 kb on - strand, within HP15_p42g10 at 7.517 kb on + strand at 7.808 kb on - strand, within HP15_p42g12 at 7.892 kb on - strand, within HP15_p42g12
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 5,732 + HP15_p42g7 0.81 -1.2 5,740 - HP15_p42g7 0.82 +2.0 5,768 + HP15_p42g7 0.84 -1.7 5,776 + HP15_p42g7 0.85 -0.5 5,784 - HP15_p42g7 0.86 -0.8 5,784 - HP15_p42g7 0.86 +0.5 5,805 - HP15_p42g7 0.88 +0.7 5,831 - -1.1 5,852 - -0.8 5,863 - +0.0 5,881 + -0.8 5,881 - +1.5 5,882 - -0.1 5,909 - +1.2 6,182 - -0.6 6,313 - -0.7 6,319 - HP15_p42g9 0.11 +0.7 6,442 - HP15_p42g9 0.55 +0.6 6,700 - +0.1 6,781 + HP15_p42g10 0.23 +1.8 6,880 - HP15_p42g10 0.51 -0.7 6,946 - HP15_p42g10 0.70 +0.1 6,979 - HP15_p42g10 0.79 +1.3 7,517 + +1.7 7,808 - HP15_p42g12 0.45 -1.7 7,892 - HP15_p42g12 0.56 +0.2
Or see this region's nucleotide sequence