Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3905 and HP15_3906 are separated by 78 nucleotides HP15_3906 and HP15_3907 are separated by 122 nucleotides
HP15_3905: HP15_3905 - lipoprotein, YaeC family, at 4,134,602 to 4,135,384
_3905
HP15_3906: HP15_3906 - protein containing alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen / peroxiredoxin, C-terminal, at 4,135,463 to 4,136,116
_3906
HP15_3907: HP15_3907 - sodium/alanine symporter family protein, at 4,136,239 to 4,137,600
_3907
Position (kb) 4135
4136
4137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4134.841 kb on + strand, within HP15_3905 at 4134.886 kb on - strand at 4134.910 kb on + strand, within HP15_3905 at 4134.986 kb on + strand, within HP15_3905 at 4135.081 kb on - strand, within HP15_3905 at 4135.137 kb on + strand, within HP15_3905 at 4135.158 kb on + strand, within HP15_3905 at 4135.197 kb on + strand, within HP15_3905 at 4135.197 kb on + strand, within HP15_3905 at 4135.204 kb on - strand, within HP15_3905 at 4135.247 kb on + strand, within HP15_3905 at 4135.362 kb on - strand at 4135.521 kb on + strand at 4135.521 kb on + strand at 4135.583 kb on + strand, within HP15_3906 at 4135.697 kb on - strand, within HP15_3906 at 4135.756 kb on + strand, within HP15_3906 at 4135.756 kb on + strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.850 kb on + strand, within HP15_3906 at 4135.858 kb on - strand, within HP15_3906 at 4135.858 kb on - strand, within HP15_3906 at 4135.900 kb on + strand, within HP15_3906 at 4135.900 kb on + strand, within HP15_3906 at 4136.075 kb on - strand at 4136.126 kb on + strand at 4136.134 kb on - strand at 4136.139 kb on - strand at 4136.215 kb on - strand at 4136.245 kb on - strand at 4136.245 kb on - strand at 4136.245 kb on - strand at 4136.300 kb on - strand at 4136.300 kb on - strand at 4136.374 kb on + strand at 4136.474 kb on + strand, within HP15_3907 at 4136.482 kb on - strand, within HP15_3907 at 4136.488 kb on + strand, within HP15_3907 at 4136.488 kb on + strand, within HP15_3907 at 4136.529 kb on + strand, within HP15_3907 at 4136.578 kb on + strand, within HP15_3907 at 4136.586 kb on - strand, within HP15_3907 at 4136.586 kb on - strand, within HP15_3907 at 4136.792 kb on - strand, within HP15_3907 at 4136.808 kb on + strand, within HP15_3907 at 4136.918 kb on - strand, within HP15_3907 at 4136.970 kb on + strand, within HP15_3907 at 4136.978 kb on - strand, within HP15_3907 at 4136.997 kb on + strand, within HP15_3907 at 4137.095 kb on + strand, within HP15_3907
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 4,134,841 + HP15_3905 0.31 +0.8 4,134,886 - +1.6 4,134,910 + HP15_3905 0.39 -1.2 4,134,986 + HP15_3905 0.49 +0.2 4,135,081 - HP15_3905 0.61 -0.8 4,135,137 + HP15_3905 0.68 -1.6 4,135,158 + HP15_3905 0.71 +1.0 4,135,197 + HP15_3905 0.76 +0.9 4,135,197 + HP15_3905 0.76 -0.6 4,135,204 - HP15_3905 0.77 -0.1 4,135,247 + HP15_3905 0.82 +0.1 4,135,362 - -2.8 4,135,521 + +0.2 4,135,521 + -0.4 4,135,583 + HP15_3906 0.18 +0.2 4,135,697 - HP15_3906 0.36 +0.2 4,135,756 + HP15_3906 0.45 -0.9 4,135,756 + HP15_3906 0.45 +0.7 4,135,764 - HP15_3906 0.46 -0.6 4,135,764 - HP15_3906 0.46 -1.0 4,135,764 - HP15_3906 0.46 -0.3 4,135,764 - HP15_3906 0.46 +1.0 4,135,850 + HP15_3906 0.59 -2.3 4,135,858 - HP15_3906 0.60 -2.2 4,135,858 - HP15_3906 0.60 -0.5 4,135,900 + HP15_3906 0.67 +0.8 4,135,900 + HP15_3906 0.67 +0.3 4,136,075 - +1.2 4,136,126 + -0.4 4,136,134 - -0.4 4,136,139 - -0.6 4,136,215 - -1.0 4,136,245 - -0.3 4,136,245 - -0.5 4,136,245 - +0.3 4,136,300 - +0.3 4,136,300 - +0.7 4,136,374 + -0.7 4,136,474 + HP15_3907 0.17 +0.2 4,136,482 - HP15_3907 0.18 -0.0 4,136,488 + HP15_3907 0.18 -0.2 4,136,488 + HP15_3907 0.18 -0.3 4,136,529 + HP15_3907 0.21 +2.7 4,136,578 + HP15_3907 0.25 -0.3 4,136,586 - HP15_3907 0.25 +0.9 4,136,586 - HP15_3907 0.25 +1.0 4,136,792 - HP15_3907 0.41 +2.2 4,136,808 + HP15_3907 0.42 +0.3 4,136,918 - HP15_3907 0.50 -0.4 4,136,970 + HP15_3907 0.54 +1.8 4,136,978 - HP15_3907 0.54 -0.2 4,136,997 + HP15_3907 0.56 -0.8 4,137,095 + HP15_3907 0.63 -0.1
Or see this region's nucleotide sequence