Strain Fitness in Marinobacter adhaerens HP15 around HP15_3647

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3645 and HP15_3646 are separated by 96 nucleotidesHP15_3646 and HP15_3647 are separated by 179 nucleotidesHP15_3647 and HP15_3648 are separated by 849 nucleotides HP15_3645: HP15_3645 - hypothetical protein, at 3,838,296 to 3,838,901 _3645 HP15_3646: HP15_3646 - hypothetical protein, at 3,838,998 to 3,839,264 _3646 HP15_3647: HP15_3647 - hypothetical protein, at 3,839,444 to 3,840,112 _3647 HP15_3648: HP15_3648 - ribonucleotide-diphosphate reductase beta subunit, at 3,840,962 to 3,842,020 _3648 Position (kb) 3839 3840 3841Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3838.535 kb on + strand, within HP15_3645at 3838.535 kb on + strand, within HP15_3645at 3838.540 kb on + strand, within HP15_3645at 3838.611 kb on + strand, within HP15_3645at 3838.626 kb on + strand, within HP15_3645at 3838.626 kb on - strand, within HP15_3645at 3838.648 kb on + strand, within HP15_3645at 3838.677 kb on - strand, within HP15_3645at 3838.723 kb on + strand, within HP15_3645at 3838.769 kb on - strand, within HP15_3645at 3838.802 kb on + strand, within HP15_3645at 3838.809 kb on + strand, within HP15_3645at 3838.814 kb on + strand, within HP15_3645at 3838.821 kb on - strand, within HP15_3645at 3838.821 kb on - strand, within HP15_3645at 3838.919 kb on + strandat 3838.951 kb on - strandat 3838.996 kb on + strandat 3838.996 kb on + strandat 3839.004 kb on - strandat 3839.029 kb on - strand, within HP15_3646at 3839.071 kb on - strand, within HP15_3646at 3839.216 kb on - strand, within HP15_3646at 3839.217 kb on - strand, within HP15_3646at 3839.403 kb on + strandat 3839.467 kb on + strandat 3839.496 kb on - strandat 3839.591 kb on + strand, within HP15_3647at 3839.599 kb on - strand, within HP15_3647at 3839.652 kb on + strand, within HP15_3647at 3839.709 kb on + strand, within HP15_3647at 3839.856 kb on - strand, within HP15_3647at 3839.902 kb on - strand, within HP15_3647at 3840.032 kb on - strand, within HP15_3647at 3840.032 kb on - strand, within HP15_3647at 3840.101 kb on + strandat 3840.109 kb on - strandat 3840.142 kb on + strandat 3840.142 kb on + strandat 3840.255 kb on - strandat 3840.334 kb on - strandat 3840.424 kb on + strandat 3840.424 kb on + strandat 3840.429 kb on + strandat 3840.429 kb on + strandat 3840.446 kb on + strandat 3840.486 kb on + strandat 3840.583 kb on - strandat 3840.633 kb on + strandat 3840.704 kb on - strandat 3840.799 kb on + strandat 3840.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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3,838,535 + HP15_3645 0.39 +1.3
3,838,535 + HP15_3645 0.39 -0.4
3,838,540 + HP15_3645 0.40 +0.8
3,838,611 + HP15_3645 0.52 -0.3
3,838,626 + HP15_3645 0.54 -0.4
3,838,626 - HP15_3645 0.54 -0.2
3,838,648 + HP15_3645 0.58 -1.2
3,838,677 - HP15_3645 0.63 +0.8
3,838,723 + HP15_3645 0.70 -0.5
3,838,769 - HP15_3645 0.78 +0.9
3,838,802 + HP15_3645 0.83 -1.2
3,838,809 + HP15_3645 0.85 +0.8
3,838,814 + HP15_3645 0.85 +0.0
3,838,821 - HP15_3645 0.87 -0.4
3,838,821 - HP15_3645 0.87 -0.6
3,838,919 + +0.3
3,838,951 - +1.0
3,838,996 + -2.2
3,838,996 + +0.1
3,839,004 - +0.8
3,839,029 - HP15_3646 0.12 +0.7
3,839,071 - HP15_3646 0.27 -0.7
3,839,216 - HP15_3646 0.82 +1.4
3,839,217 - HP15_3646 0.82 -0.6
3,839,403 + -1.3
3,839,467 + +1.7
3,839,496 - +0.3
3,839,591 + HP15_3647 0.22 -0.8
3,839,599 - HP15_3647 0.23 +1.1
3,839,652 + HP15_3647 0.31 +0.9
3,839,709 + HP15_3647 0.40 -0.6
3,839,856 - HP15_3647 0.62 +0.6
3,839,902 - HP15_3647 0.68 -0.2
3,840,032 - HP15_3647 0.88 +1.5
3,840,032 - HP15_3647 0.88 +0.5
3,840,101 + -0.4
3,840,109 - -0.9
3,840,142 + -2.4
3,840,142 + -0.7
3,840,255 - -0.2
3,840,334 - +0.3
3,840,424 + +3.0
3,840,424 + -0.3
3,840,429 + -0.3
3,840,429 + -0.8
3,840,446 + -0.1
3,840,486 + +0.4
3,840,583 - +0.4
3,840,633 + +0.3
3,840,704 - +0.7
3,840,799 + -0.0
3,840,811 + +0.9

Or see this region's nucleotide sequence