Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_329 and HP15_330 overlap by 11 nucleotides HP15_330 and HP15_331 are separated by 50 nucleotides HP15_331 and HP15_332 are separated by 61 nucleotides HP15_332 and HP15_333 are separated by 179 nucleotides
HP15_329: HP15_329 - two-component sensor, at 325,645 to 328,608
_329
HP15_330: HP15_330 - conserved hypothetical protein, membrane, at 328,598 to 328,774
_330
HP15_331: HP15_331 - glutamyl-Q tRNA(Asp) synthetase, at 328,825 to 329,697
_331
HP15_332: HP15_332 - transcriptional regulator, TraR/DksA family, at 329,759 to 330,199
_332
HP15_333: HP15_333 - sugar fermentation stimulation protein-like protein, at 330,379 to 331,110
_333
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.094 kb on - strand, within HP15_329 at 328.341 kb on - strand at 328.525 kb on - strand at 328.668 kb on - strand, within HP15_330 at 328.679 kb on - strand, within HP15_330 at 328.808 kb on + strand at 328.808 kb on + strand at 328.808 kb on + strand at 328.816 kb on - strand at 328.816 kb on - strand at 329.001 kb on - strand, within HP15_331 at 329.099 kb on + strand, within HP15_331 at 329.112 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.131 kb on - strand, within HP15_331 at 329.180 kb on + strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.193 kb on - strand, within HP15_331 at 329.223 kb on - strand, within HP15_331 at 329.225 kb on + strand, within HP15_331 at 329.242 kb on - strand, within HP15_331 at 329.246 kb on + strand, within HP15_331 at 329.254 kb on - strand, within HP15_331 at 329.354 kb on - strand, within HP15_331 at 329.414 kb on + strand, within HP15_331 at 329.449 kb on + strand, within HP15_331 at 329.552 kb on - strand, within HP15_331 at 329.562 kb on + strand, within HP15_331 at 329.664 kb on + strand at 330.117 kb on + strand, within HP15_332 at 330.280 kb on - strand at 330.339 kb on + strand at 330.423 kb on + strand at 330.541 kb on - strand, within HP15_333 at 330.575 kb on - strand, within HP15_333 at 330.583 kb on - strand, within HP15_333 at 330.594 kb on - strand, within HP15_333 at 330.604 kb on + strand, within HP15_333 at 330.612 kb on - strand, within HP15_333 at 330.612 kb on - strand, within HP15_333 at 330.663 kb on - strand, within HP15_333 at 330.697 kb on - strand, within HP15_333
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 328,094 - HP15_329 0.83 -2.1 328,341 - -1.4 328,525 - -0.3 328,668 - HP15_330 0.40 -0.5 328,679 - HP15_330 0.46 +0.6 328,808 + -0.8 328,808 + -1.5 328,808 + +1.3 328,816 - +0.3 328,816 - +0.7 329,001 - HP15_331 0.20 -0.2 329,099 + HP15_331 0.31 +1.8 329,112 - HP15_331 0.33 -1.8 329,120 - HP15_331 0.34 -0.8 329,120 - HP15_331 0.34 +0.0 329,131 - HP15_331 0.35 +1.1 329,180 + HP15_331 0.41 +0.7 329,188 - HP15_331 0.42 +0.7 329,188 - HP15_331 0.42 -1.3 329,193 - HP15_331 0.42 -0.3 329,223 - HP15_331 0.46 +0.5 329,225 + HP15_331 0.46 +0.8 329,242 - HP15_331 0.48 -0.2 329,246 + HP15_331 0.48 +0.9 329,254 - HP15_331 0.49 +1.9 329,354 - HP15_331 0.61 -0.5 329,414 + HP15_331 0.67 +1.9 329,449 + HP15_331 0.71 +1.7 329,552 - HP15_331 0.83 -0.3 329,562 + HP15_331 0.84 +0.7 329,664 + -1.5 330,117 + HP15_332 0.81 +1.0 330,280 - -2.1 330,339 + +0.1 330,423 + +2.2 330,541 - HP15_333 0.22 +0.7 330,575 - HP15_333 0.27 +0.1 330,583 - HP15_333 0.28 +0.2 330,594 - HP15_333 0.29 -1.4 330,604 + HP15_333 0.31 +0.8 330,612 - HP15_333 0.32 -0.0 330,612 - HP15_333 0.32 +1.2 330,663 - HP15_333 0.39 +0.1 330,697 - HP15_333 0.43 +0.4
Or see this region's nucleotide sequence