Strain Fitness in Marinobacter adhaerens HP15 around HP15_3030

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3029 and HP15_3030 are separated by 154 nucleotidesHP15_3030 and HP15_3031 are separated by 100 nucleotidesHP15_3031 and HP15_3032 are separated by 12 nucleotides HP15_3029: HP15_3029 - GntR domain protein, at 3,173,775 to 3,174,533 _3029 HP15_3030: HP15_3030 - histidine/lysine/arginine/ornithine transporter subunit, at 3,174,688 to 3,175,458 _3030 HP15_3031: HP15_3031 - L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT (from data), at 3,175,559 to 3,176,311 _3031 HP15_3032: HP15_3032 - amino acid ABC transporter, inner membrane subunit, at 3,176,324 to 3,177,067 _3032 Position (kb) 3174 3175 3176Strain fitness (log2 ratio) -2 -1 0 1 2at 3173.765 kb on - strandat 3173.770 kb on + strandat 3174.036 kb on + strand, within HP15_3029at 3174.289 kb on - strand, within HP15_3029at 3174.291 kb on + strand, within HP15_3029at 3174.365 kb on + strand, within HP15_3029at 3174.415 kb on - strand, within HP15_3029at 3174.417 kb on + strand, within HP15_3029at 3174.497 kb on + strandat 3174.613 kb on + strandat 3174.703 kb on + strandat 3174.711 kb on + strandat 3174.731 kb on + strandat 3174.739 kb on - strandat 3174.740 kb on + strandat 3174.741 kb on + strandat 3174.750 kb on + strandat 3174.814 kb on - strand, within HP15_3030at 3174.839 kb on + strand, within HP15_3030at 3174.839 kb on + strand, within HP15_3030at 3174.900 kb on + strand, within HP15_3030at 3174.908 kb on - strand, within HP15_3030at 3174.926 kb on - strand, within HP15_3030at 3175.128 kb on + strand, within HP15_3030at 3175.128 kb on + strand, within HP15_3030at 3175.128 kb on + strand, within HP15_3030at 3175.136 kb on - strand, within HP15_3030at 3175.212 kb on - strand, within HP15_3030at 3175.258 kb on + strand, within HP15_3030at 3175.260 kb on + strand, within HP15_3030at 3175.368 kb on + strand, within HP15_3030at 3175.427 kb on + strandat 3175.440 kb on - strandat 3175.465 kb on + strandat 3175.478 kb on - strandat 3175.478 kb on - strandat 3175.717 kb on + strand, within HP15_3031at 3175.784 kb on + strand, within HP15_3031at 3175.959 kb on - strand, within HP15_3031at 3175.993 kb on - strand, within HP15_3031at 3176.057 kb on + strand, within HP15_3031at 3176.066 kb on + strand, within HP15_3031at 3176.161 kb on + strand, within HP15_3031at 3176.166 kb on + strand, within HP15_3031at 3176.189 kb on + strand, within HP15_3031at 3176.213 kb on - strand, within HP15_3031at 3176.213 kb on - strand, within HP15_3031at 3176.269 kb on - strandat 3176.454 kb on + strand, within HP15_3032

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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3,173,765 - -0.0
3,173,770 + +0.1
3,174,036 + HP15_3029 0.34 -1.9
3,174,289 - HP15_3029 0.68 -0.5
3,174,291 + HP15_3029 0.68 -1.8
3,174,365 + HP15_3029 0.78 -0.8
3,174,415 - HP15_3029 0.84 -0.6
3,174,417 + HP15_3029 0.85 -0.2
3,174,497 + +0.9
3,174,613 + +1.1
3,174,703 + +0.7
3,174,711 + -0.6
3,174,731 + -0.5
3,174,739 - +2.7
3,174,740 + +0.8
3,174,741 + +0.7
3,174,750 + +0.2
3,174,814 - HP15_3030 0.16 +0.9
3,174,839 + HP15_3030 0.20 -0.1
3,174,839 + HP15_3030 0.20 +0.1
3,174,900 + HP15_3030 0.27 +1.2
3,174,908 - HP15_3030 0.29 -1.3
3,174,926 - HP15_3030 0.31 +0.2
3,175,128 + HP15_3030 0.57 +1.9
3,175,128 + HP15_3030 0.57 -1.0
3,175,128 + HP15_3030 0.57 -1.0
3,175,136 - HP15_3030 0.58 -0.2
3,175,212 - HP15_3030 0.68 +0.1
3,175,258 + HP15_3030 0.74 +0.9
3,175,260 + HP15_3030 0.74 +2.7
3,175,368 + HP15_3030 0.88 +1.7
3,175,427 + +0.1
3,175,440 - -0.5
3,175,465 + -0.1
3,175,478 - +0.5
3,175,478 - +0.3
3,175,717 + HP15_3031 0.21 +0.3
3,175,784 + HP15_3031 0.30 -0.4
3,175,959 - HP15_3031 0.53 +0.3
3,175,993 - HP15_3031 0.58 -0.6
3,176,057 + HP15_3031 0.66 -0.2
3,176,066 + HP15_3031 0.67 +0.3
3,176,161 + HP15_3031 0.80 -0.4
3,176,166 + HP15_3031 0.81 +0.8
3,176,189 + HP15_3031 0.84 -0.3
3,176,213 - HP15_3031 0.87 -0.5
3,176,213 - HP15_3031 0.87 -0.1
3,176,269 - -1.4
3,176,454 + HP15_3032 0.17 +0.3

Or see this region's nucleotide sequence