Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3029 and HP15_3030 are separated by 154 nucleotides HP15_3030 and HP15_3031 are separated by 100 nucleotides HP15_3031 and HP15_3032 are separated by 12 nucleotides
HP15_3029: HP15_3029 - GntR domain protein, at 3,173,775 to 3,174,533
_3029
HP15_3030: HP15_3030 - histidine/lysine/arginine/ornithine transporter subunit, at 3,174,688 to 3,175,458
_3030
HP15_3031: HP15_3031 - L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT (from data) , at 3,175,559 to 3,176,311
_3031
HP15_3032: HP15_3032 - amino acid ABC transporter, inner membrane subunit, at 3,176,324 to 3,177,067
_3032
Position (kb)
3174
3175
3176 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3173.765 kb on - strand at 3173.770 kb on + strand at 3174.036 kb on + strand, within HP15_3029 at 3174.289 kb on - strand, within HP15_3029 at 3174.291 kb on + strand, within HP15_3029 at 3174.365 kb on + strand, within HP15_3029 at 3174.415 kb on - strand, within HP15_3029 at 3174.417 kb on + strand, within HP15_3029 at 3174.497 kb on + strand at 3174.613 kb on + strand at 3174.703 kb on + strand at 3174.711 kb on + strand at 3174.731 kb on + strand at 3174.739 kb on - strand at 3174.740 kb on + strand at 3174.741 kb on + strand at 3174.750 kb on + strand at 3174.814 kb on - strand, within HP15_3030 at 3174.839 kb on + strand, within HP15_3030 at 3174.839 kb on + strand, within HP15_3030 at 3174.900 kb on + strand, within HP15_3030 at 3174.908 kb on - strand, within HP15_3030 at 3174.926 kb on - strand, within HP15_3030 at 3175.128 kb on + strand, within HP15_3030 at 3175.128 kb on + strand, within HP15_3030 at 3175.128 kb on + strand, within HP15_3030 at 3175.136 kb on - strand, within HP15_3030 at 3175.212 kb on - strand, within HP15_3030 at 3175.258 kb on + strand, within HP15_3030 at 3175.260 kb on + strand, within HP15_3030 at 3175.368 kb on + strand, within HP15_3030 at 3175.427 kb on + strand at 3175.440 kb on - strand at 3175.465 kb on + strand at 3175.478 kb on - strand at 3175.478 kb on - strand at 3175.717 kb on + strand, within HP15_3031 at 3175.784 kb on + strand, within HP15_3031 at 3175.959 kb on - strand, within HP15_3031 at 3175.993 kb on - strand, within HP15_3031 at 3176.057 kb on + strand, within HP15_3031 at 3176.066 kb on + strand, within HP15_3031 at 3176.161 kb on + strand, within HP15_3031 at 3176.166 kb on + strand, within HP15_3031 at 3176.189 kb on + strand, within HP15_3031 at 3176.213 kb on - strand, within HP15_3031 at 3176.213 kb on - strand, within HP15_3031 at 3176.269 kb on - strand at 3176.454 kb on + strand, within HP15_3032
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 3,173,765 - -0.0 3,173,770 + +0.1 3,174,036 + HP15_3029 0.34 -1.9 3,174,289 - HP15_3029 0.68 -0.5 3,174,291 + HP15_3029 0.68 -1.8 3,174,365 + HP15_3029 0.78 -0.8 3,174,415 - HP15_3029 0.84 -0.6 3,174,417 + HP15_3029 0.85 -0.2 3,174,497 + +0.9 3,174,613 + +1.1 3,174,703 + +0.7 3,174,711 + -0.6 3,174,731 + -0.5 3,174,739 - +2.7 3,174,740 + +0.8 3,174,741 + +0.7 3,174,750 + +0.2 3,174,814 - HP15_3030 0.16 +0.9 3,174,839 + HP15_3030 0.20 -0.1 3,174,839 + HP15_3030 0.20 +0.1 3,174,900 + HP15_3030 0.27 +1.2 3,174,908 - HP15_3030 0.29 -1.3 3,174,926 - HP15_3030 0.31 +0.2 3,175,128 + HP15_3030 0.57 +1.9 3,175,128 + HP15_3030 0.57 -1.0 3,175,128 + HP15_3030 0.57 -1.0 3,175,136 - HP15_3030 0.58 -0.2 3,175,212 - HP15_3030 0.68 +0.1 3,175,258 + HP15_3030 0.74 +0.9 3,175,260 + HP15_3030 0.74 +2.7 3,175,368 + HP15_3030 0.88 +1.7 3,175,427 + +0.1 3,175,440 - -0.5 3,175,465 + -0.1 3,175,478 - +0.5 3,175,478 - +0.3 3,175,717 + HP15_3031 0.21 +0.3 3,175,784 + HP15_3031 0.30 -0.4 3,175,959 - HP15_3031 0.53 +0.3 3,175,993 - HP15_3031 0.58 -0.6 3,176,057 + HP15_3031 0.66 -0.2 3,176,066 + HP15_3031 0.67 +0.3 3,176,161 + HP15_3031 0.80 -0.4 3,176,166 + HP15_3031 0.81 +0.8 3,176,189 + HP15_3031 0.84 -0.3 3,176,213 - HP15_3031 0.87 -0.5 3,176,213 - HP15_3031 0.87 -0.1 3,176,269 - -1.4 3,176,454 + HP15_3032 0.17 +0.3
Or see this region's nucleotide sequence