Strain Fitness in Marinobacter adhaerens HP15 around HP15_2992

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2991 and HP15_2992 are separated by 36 nucleotidesHP15_2992 and HP15_2993 are separated by 113 nucleotides HP15_2991: HP15_2991 - lipoprotein, at 3,133,856 to 3,135,061 _2991 HP15_2992: HP15_2992 - secreted protein containing DUF400, at 3,135,098 to 3,135,646 _2992 HP15_2993: HP15_2993 - conjugative transfer protein, at 3,135,760 to 3,137,196 _2993 Position (kb) 3135 3136Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3134.229 kb on - strand, within HP15_2991at 3134.369 kb on + strand, within HP15_2991at 3134.374 kb on + strand, within HP15_2991at 3134.379 kb on + strand, within HP15_2991at 3134.384 kb on + strand, within HP15_2991at 3134.464 kb on + strand, within HP15_2991at 3134.495 kb on + strand, within HP15_2991at 3134.497 kb on + strand, within HP15_2991at 3134.508 kb on - strand, within HP15_2991at 3134.516 kb on + strand, within HP15_2991at 3134.570 kb on - strand, within HP15_2991at 3134.634 kb on + strand, within HP15_2991at 3134.634 kb on + strand, within HP15_2991at 3134.634 kb on + strand, within HP15_2991at 3134.642 kb on - strand, within HP15_2991at 3134.780 kb on - strand, within HP15_2991at 3134.891 kb on - strand, within HP15_2991at 3134.895 kb on + strand, within HP15_2991at 3134.903 kb on + strand, within HP15_2991at 3134.954 kb on + strandat 3134.972 kb on + strandat 3135.028 kb on - strandat 3135.039 kb on + strandat 3135.073 kb on + strandat 3135.082 kb on - strandat 3135.095 kb on + strandat 3135.105 kb on + strandat 3135.119 kb on + strandat 3135.131 kb on + strandat 3135.134 kb on - strandat 3135.392 kb on + strand, within HP15_2992at 3135.398 kb on + strand, within HP15_2992at 3135.449 kb on + strand, within HP15_2992at 3135.476 kb on + strand, within HP15_2992at 3135.522 kb on - strand, within HP15_2992at 3135.579 kb on + strand, within HP15_2992at 3135.809 kb on - strandat 3135.825 kb on + strandat 3135.825 kb on + strandat 3135.825 kb on + strandat 3135.825 kb on + strandat 3135.833 kb on - strandat 3135.833 kb on - strandat 3135.839 kb on - strandat 3135.840 kb on - strandat 3135.845 kb on - strandat 3135.953 kb on + strand, within HP15_2993at 3135.953 kb on + strand, within HP15_2993at 3135.958 kb on + strand, within HP15_2993at 3135.963 kb on + strand, within HP15_2993at 3136.045 kb on + strand, within HP15_2993at 3136.116 kb on - strand, within HP15_2993at 3136.328 kb on + strand, within HP15_2993at 3136.334 kb on - strand, within HP15_2993at 3136.475 kb on + strand, within HP15_2993at 3136.506 kb on + strand, within HP15_2993at 3136.630 kb on + strand, within HP15_2993

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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3,134,229 - HP15_2991 0.31 +0.6
3,134,369 + HP15_2991 0.43 +1.4
3,134,374 + HP15_2991 0.43 +0.8
3,134,379 + HP15_2991 0.43 +0.4
3,134,384 + HP15_2991 0.44 +1.6
3,134,464 + HP15_2991 0.50 +1.4
3,134,495 + HP15_2991 0.53 -1.0
3,134,497 + HP15_2991 0.53 +1.0
3,134,508 - HP15_2991 0.54 +0.7
3,134,516 + HP15_2991 0.55 +1.6
3,134,570 - HP15_2991 0.59 +0.7
3,134,634 + HP15_2991 0.65 +1.5
3,134,634 + HP15_2991 0.65 +1.8
3,134,634 + HP15_2991 0.65 +0.9
3,134,642 - HP15_2991 0.65 +1.9
3,134,780 - HP15_2991 0.77 +1.7
3,134,891 - HP15_2991 0.86 +5.2
3,134,895 + HP15_2991 0.86 +1.5
3,134,903 + HP15_2991 0.87 +0.9
3,134,954 + +1.5
3,134,972 + +1.6
3,135,028 - +2.2
3,135,039 + +1.7
3,135,073 + +0.7
3,135,082 - +0.9
3,135,095 + +0.6
3,135,105 + -0.1
3,135,119 + +2.4
3,135,131 + +1.5
3,135,134 - -0.7
3,135,392 + HP15_2992 0.54 +0.4
3,135,398 + HP15_2992 0.55 +1.2
3,135,449 + HP15_2992 0.64 +1.4
3,135,476 + HP15_2992 0.69 +1.0
3,135,522 - HP15_2992 0.77 -0.0
3,135,579 + HP15_2992 0.88 +0.6
3,135,809 - -0.2
3,135,825 + +1.1
3,135,825 + -0.1
3,135,825 + +1.2
3,135,825 + -0.1
3,135,833 - -0.9
3,135,833 - +2.1
3,135,839 - -0.6
3,135,840 - +0.1
3,135,845 - +0.0
3,135,953 + HP15_2993 0.13 -0.5
3,135,953 + HP15_2993 0.13 +1.2
3,135,958 + HP15_2993 0.14 +1.1
3,135,963 + HP15_2993 0.14 +1.0
3,136,045 + HP15_2993 0.20 +0.2
3,136,116 - HP15_2993 0.25 -0.6
3,136,328 + HP15_2993 0.40 +0.7
3,136,334 - HP15_2993 0.40 +0.4
3,136,475 + HP15_2993 0.50 -0.7
3,136,506 + HP15_2993 0.52 +0.8
3,136,630 + HP15_2993 0.61 -0.1

Or see this region's nucleotide sequence