Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2847 and HP15_2848 are separated by 27 nucleotides HP15_2848 and HP15_2849 are separated by 260 nucleotides HP15_2849 and HP15_2850 are separated by 27 nucleotides HP15_2850 and HP15_2851 are separated by 73 nucleotides
HP15_2847: HP15_2847 - secreted protein containing PEGA domain, at 2,987,888 to 2,988,502
_2847
HP15_2848: HP15_2848 - secreted protein, at 2,988,530 to 2,988,823
_2848
HP15_2849: HP15_2849 - SEC-C motif domain protein, at 2,989,084 to 2,989,428
_2849
HP15_2850: HP15_2850 - conserved hypothetical protein, at 2,989,456 to 2,989,890
_2850
HP15_2851: HP15_2851 - transmembrane transport protein, at 2,989,964 to 2,991,103
_2851
Position (kb)
2989
2990 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2988.456 kb on + strand at 2988.456 kb on + strand at 2988.484 kb on + strand at 2988.484 kb on + strand at 2988.484 kb on + strand at 2988.492 kb on + strand at 2988.492 kb on - strand at 2988.492 kb on - strand at 2988.494 kb on + strand at 2988.500 kb on - strand at 2988.502 kb on - strand at 2988.502 kb on - strand at 2988.548 kb on - strand at 2988.613 kb on + strand, within HP15_2848 at 2988.674 kb on + strand, within HP15_2848 at 2988.686 kb on + strand, within HP15_2848 at 2988.704 kb on + strand, within HP15_2848 at 2988.761 kb on + strand, within HP15_2848 at 2988.761 kb on + strand, within HP15_2848 at 2988.781 kb on + strand, within HP15_2848 at 2988.791 kb on - strand, within HP15_2848 at 2988.852 kb on + strand at 2988.860 kb on - strand at 2988.869 kb on + strand at 2988.877 kb on - strand at 2988.999 kb on - strand at 2989.029 kb on + strand at 2989.116 kb on + strand at 2989.131 kb on - strand, within HP15_2849 at 2989.139 kb on - strand, within HP15_2849 at 2989.160 kb on + strand, within HP15_2849 at 2989.211 kb on + strand, within HP15_2849 at 2989.253 kb on + strand, within HP15_2849 at 2989.253 kb on + strand, within HP15_2849 at 2989.253 kb on + strand, within HP15_2849 at 2989.261 kb on - strand, within HP15_2849 at 2989.261 kb on - strand, within HP15_2849 at 2989.282 kb on - strand, within HP15_2849 at 2989.322 kb on + strand, within HP15_2849 at 2989.322 kb on + strand, within HP15_2849 at 2989.330 kb on - strand, within HP15_2849 at 2989.330 kb on - strand, within HP15_2849 at 2989.330 kb on - strand, within HP15_2849 at 2989.335 kb on - strand, within HP15_2849 at 2989.469 kb on + strand at 2989.469 kb on + strand at 2989.497 kb on + strand at 2989.535 kb on - strand, within HP15_2850 at 2989.588 kb on - strand, within HP15_2850 at 2989.756 kb on + strand, within HP15_2850 at 2989.763 kb on + strand, within HP15_2850 at 2989.764 kb on - strand, within HP15_2850 at 2989.881 kb on - strand at 2989.883 kb on + strand at 2989.899 kb on - strand at 2990.076 kb on - strand at 2990.112 kb on + strand, within HP15_2851 at 2990.118 kb on - strand, within HP15_2851 at 2990.170 kb on - strand, within HP15_2851 at 2990.170 kb on - strand, within HP15_2851 at 2990.178 kb on + strand, within HP15_2851 at 2990.188 kb on + strand, within HP15_2851 at 2990.215 kb on + strand, within HP15_2851 at 2990.330 kb on - strand, within HP15_2851 at 2990.401 kb on - strand, within HP15_2851 at 2990.403 kb on - strand, within HP15_2851 at 2990.426 kb on - strand, within HP15_2851 at 2990.473 kb on + strand, within HP15_2851 at 2990.481 kb on - strand, within HP15_2851 at 2990.482 kb on + strand, within HP15_2851 at 2990.540 kb on - strand, within HP15_2851 at 2990.621 kb on + strand, within HP15_2851 at 2990.654 kb on + strand, within HP15_2851 at 2990.716 kb on + strand, within HP15_2851 at 2990.724 kb on - strand, within HP15_2851 at 2990.729 kb on - strand, within HP15_2851 at 2990.757 kb on + strand, within HP15_2851 at 2990.786 kb on - strand, within HP15_2851 at 2990.850 kb on + strand, within HP15_2851 at 2990.862 kb on - strand, within HP15_2851
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,988,456 + +2.3 2,988,456 + -1.4 2,988,484 + -0.5 2,988,484 + -2.3 2,988,484 + -1.4 2,988,492 + +0.2 2,988,492 - -0.9 2,988,492 - -2.0 2,988,494 + +1.3 2,988,500 - +0.5 2,988,502 - -0.1 2,988,502 - -0.6 2,988,548 - +1.4 2,988,613 + HP15_2848 0.28 -0.0 2,988,674 + HP15_2848 0.49 +0.4 2,988,686 + HP15_2848 0.53 +0.2 2,988,704 + HP15_2848 0.59 -0.2 2,988,761 + HP15_2848 0.79 +0.8 2,988,761 + HP15_2848 0.79 -0.3 2,988,781 + HP15_2848 0.85 +0.6 2,988,791 - HP15_2848 0.89 +0.6 2,988,852 + +1.1 2,988,860 - -1.3 2,988,869 + -0.2 2,988,877 - -0.2 2,988,999 - -0.8 2,989,029 + +0.3 2,989,116 + +0.6 2,989,131 - HP15_2849 0.14 -0.5 2,989,139 - HP15_2849 0.16 +1.2 2,989,160 + HP15_2849 0.22 -2.2 2,989,211 + HP15_2849 0.37 -0.3 2,989,253 + HP15_2849 0.49 +1.0 2,989,253 + HP15_2849 0.49 -0.6 2,989,253 + HP15_2849 0.49 +0.4 2,989,261 - HP15_2849 0.51 -0.3 2,989,261 - HP15_2849 0.51 -0.1 2,989,282 - HP15_2849 0.57 +0.6 2,989,322 + HP15_2849 0.69 +1.8 2,989,322 + HP15_2849 0.69 -0.1 2,989,330 - HP15_2849 0.71 -0.3 2,989,330 - HP15_2849 0.71 -0.6 2,989,330 - HP15_2849 0.71 +0.7 2,989,335 - HP15_2849 0.73 +0.8 2,989,469 + +0.9 2,989,469 + -0.2 2,989,497 + -0.2 2,989,535 - HP15_2850 0.18 -0.4 2,989,588 - HP15_2850 0.30 +1.9 2,989,756 + HP15_2850 0.69 -0.1 2,989,763 + HP15_2850 0.71 -0.5 2,989,764 - HP15_2850 0.71 -0.1 2,989,881 - +1.3 2,989,883 + -0.3 2,989,899 - -0.2 2,990,076 - -0.4 2,990,112 + HP15_2851 0.13 -0.9 2,990,118 - HP15_2851 0.14 -0.4 2,990,170 - HP15_2851 0.18 +0.5 2,990,170 - HP15_2851 0.18 -0.1 2,990,178 + HP15_2851 0.19 +1.2 2,990,188 + HP15_2851 0.20 +1.3 2,990,215 + HP15_2851 0.22 +0.1 2,990,330 - HP15_2851 0.32 +1.5 2,990,401 - HP15_2851 0.38 +0.1 2,990,403 - HP15_2851 0.39 +1.4 2,990,426 - HP15_2851 0.41 +0.1 2,990,473 + HP15_2851 0.45 +0.2 2,990,481 - HP15_2851 0.45 -0.5 2,990,482 + HP15_2851 0.45 +1.6 2,990,540 - HP15_2851 0.51 -0.0 2,990,621 + HP15_2851 0.58 -0.6 2,990,654 + HP15_2851 0.61 +1.9 2,990,716 + HP15_2851 0.66 -0.6 2,990,724 - HP15_2851 0.67 -1.0 2,990,729 - HP15_2851 0.67 +0.9 2,990,757 + HP15_2851 0.70 -0.5 2,990,786 - HP15_2851 0.72 -0.2 2,990,850 + HP15_2851 0.78 -0.3 2,990,862 - HP15_2851 0.79 +0.1
Or see this region's nucleotide sequence