Strain Fitness in Marinobacter adhaerens HP15 around HP15_2603

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2602 and HP15_2603 are separated by 4 nucleotidesHP15_2603 and HP15_2604 are separated by 157 nucleotides HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860 _2602 HP15_2603: HP15_2603 - hydantoin utilization protein A, at 2,751,865 to 2,753,820 _2603 HP15_2604: HP15_2604 - protein containing DUF1329, at 2,753,978 to 2,755,195 _2604 Position (kb) 2751 2752 2753 2754Strain fitness (log2 ratio) -2 -1 0 1 2at 2750.868 kb on + strand, within HP15_2602at 2750.868 kb on + strand, within HP15_2602at 2750.868 kb on + strand, within HP15_2602at 2750.871 kb on - strand, within HP15_2602at 2750.918 kb on + strand, within HP15_2602at 2751.008 kb on - strand, within HP15_2602at 2751.022 kb on - strand, within HP15_2602at 2751.076 kb on + strand, within HP15_2602at 2751.183 kb on + strand, within HP15_2602at 2751.183 kb on + strand, within HP15_2602at 2751.207 kb on + strand, within HP15_2602at 2751.207 kb on + strand, within HP15_2602at 2751.244 kb on + strand, within HP15_2602at 2751.262 kb on - strand, within HP15_2602at 2751.435 kb on + strand, within HP15_2602at 2751.443 kb on - strand, within HP15_2602at 2751.484 kb on + strand, within HP15_2602at 2751.510 kb on - strand, within HP15_2602at 2751.521 kb on + strand, within HP15_2602at 2751.529 kb on - strand, within HP15_2602at 2751.529 kb on - strand, within HP15_2602at 2751.569 kb on - strand, within HP15_2602at 2751.712 kb on - strandat 2751.712 kb on - strandat 2751.794 kb on - strandat 2751.876 kb on - strandat 2751.986 kb on + strandat 2752.009 kb on - strandat 2752.009 kb on - strandat 2752.038 kb on + strandat 2752.038 kb on + strandat 2752.233 kb on + strand, within HP15_2603at 2752.425 kb on + strand, within HP15_2603at 2752.446 kb on + strand, within HP15_2603at 2752.567 kb on + strand, within HP15_2603at 2752.575 kb on - strand, within HP15_2603at 2752.613 kb on + strand, within HP15_2603at 2752.631 kb on - strand, within HP15_2603at 2752.654 kb on - strand, within HP15_2603at 2752.709 kb on + strand, within HP15_2603at 2752.711 kb on - strand, within HP15_2603at 2752.717 kb on - strand, within HP15_2603at 2752.744 kb on + strand, within HP15_2603at 2752.809 kb on - strand, within HP15_2603at 2752.826 kb on + strand, within HP15_2603at 2752.864 kb on + strand, within HP15_2603at 2752.869 kb on + strand, within HP15_2603at 2752.890 kb on + strand, within HP15_2603at 2752.890 kb on + strand, within HP15_2603at 2752.893 kb on - strand, within HP15_2603at 2752.998 kb on + strand, within HP15_2603at 2753.001 kb on - strand, within HP15_2603at 2753.024 kb on - strand, within HP15_2603at 2753.074 kb on + strand, within HP15_2603at 2753.074 kb on + strand, within HP15_2603at 2753.082 kb on - strand, within HP15_2603at 2753.082 kb on - strand, within HP15_2603at 2753.086 kb on + strand, within HP15_2603at 2753.171 kb on - strand, within HP15_2603at 2753.411 kb on - strand, within HP15_2603at 2753.470 kb on - strand, within HP15_2603at 2753.579 kb on + strand, within HP15_2603at 2753.671 kb on + strandat 2753.672 kb on - strandat 2753.848 kb on - strandat 2753.886 kb on + strandat 2753.887 kb on + strandat 2753.913 kb on + strandat 2753.921 kb on - strandat 2753.921 kb on - strandat 2753.932 kb on + strandat 2753.940 kb on - strandat 2753.961 kb on - strandat 2754.003 kb on - strandat 2754.101 kb on + strand, within HP15_2604at 2754.160 kb on + strand, within HP15_2604at 2754.160 kb on + strand, within HP15_2604at 2754.168 kb on - strand, within HP15_2604at 2754.213 kb on + strand, within HP15_2604at 2754.260 kb on + strand, within HP15_2604at 2754.429 kb on + strand, within HP15_2604at 2754.437 kb on - strand, within HP15_2604at 2754.486 kb on + strand, within HP15_2604

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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2,750,868 + HP15_2602 0.47 +1.2
2,750,868 + HP15_2602 0.47 -0.4
2,750,868 + HP15_2602 0.47 +0.9
2,750,871 - HP15_2602 0.47 -0.5
2,750,918 + HP15_2602 0.50 +1.5
2,751,008 - HP15_2602 0.54 -0.2
2,751,022 - HP15_2602 0.55 +0.6
2,751,076 + HP15_2602 0.58 +1.5
2,751,183 + HP15_2602 0.64 -0.3
2,751,183 + HP15_2602 0.64 +0.7
2,751,207 + HP15_2602 0.65 +1.5
2,751,207 + HP15_2602 0.65 -0.7
2,751,244 + HP15_2602 0.67 -0.3
2,751,262 - HP15_2602 0.68 +0.6
2,751,435 + HP15_2602 0.77 -0.2
2,751,443 - HP15_2602 0.78 +1.1
2,751,484 + HP15_2602 0.80 +1.0
2,751,510 - HP15_2602 0.81 +0.9
2,751,521 + HP15_2602 0.82 +1.2
2,751,529 - HP15_2602 0.82 +0.1
2,751,529 - HP15_2602 0.82 -0.1
2,751,569 - HP15_2602 0.84 -0.4
2,751,712 - +0.7
2,751,712 - -1.3
2,751,794 - -0.3
2,751,876 - +0.1
2,751,986 + -0.7
2,752,009 - +0.3
2,752,009 - +0.4
2,752,038 + -0.8
2,752,038 + +0.1
2,752,233 + HP15_2603 0.19 -0.2
2,752,425 + HP15_2603 0.29 -0.6
2,752,446 + HP15_2603 0.30 -1.1
2,752,567 + HP15_2603 0.36 -0.4
2,752,575 - HP15_2603 0.36 -0.3
2,752,613 + HP15_2603 0.38 -0.7
2,752,631 - HP15_2603 0.39 -0.5
2,752,654 - HP15_2603 0.40 +0.5
2,752,709 + HP15_2603 0.43 -1.0
2,752,711 - HP15_2603 0.43 -0.3
2,752,717 - HP15_2603 0.44 +0.5
2,752,744 + HP15_2603 0.45 -1.9
2,752,809 - HP15_2603 0.48 +0.0
2,752,826 + HP15_2603 0.49 -0.1
2,752,864 + HP15_2603 0.51 +1.1
2,752,869 + HP15_2603 0.51 -1.4
2,752,890 + HP15_2603 0.52 +0.7
2,752,890 + HP15_2603 0.52 +0.2
2,752,893 - HP15_2603 0.53 +0.2
2,752,998 + HP15_2603 0.58 -0.1
2,753,001 - HP15_2603 0.58 +0.9
2,753,024 - HP15_2603 0.59 +0.3
2,753,074 + HP15_2603 0.62 -0.1
2,753,074 + HP15_2603 0.62 -0.0
2,753,082 - HP15_2603 0.62 -1.7
2,753,082 - HP15_2603 0.62 -0.4
2,753,086 + HP15_2603 0.62 +0.8
2,753,171 - HP15_2603 0.67 -0.1
2,753,411 - HP15_2603 0.79 +0.6
2,753,470 - HP15_2603 0.82 -0.6
2,753,579 + HP15_2603 0.88 -1.0
2,753,671 + +1.8
2,753,672 - -0.4
2,753,848 - -0.7
2,753,886 + +1.6
2,753,887 + +0.6
2,753,913 + -0.4
2,753,921 - -0.7
2,753,921 - -1.1
2,753,932 + -1.3
2,753,940 - -0.3
2,753,961 - +0.0
2,754,003 - +0.6
2,754,101 + HP15_2604 0.10 -0.4
2,754,160 + HP15_2604 0.15 +1.3
2,754,160 + HP15_2604 0.15 +0.2
2,754,168 - HP15_2604 0.16 +0.1
2,754,213 + HP15_2604 0.19 +1.3
2,754,260 + HP15_2604 0.23 +0.4
2,754,429 + HP15_2604 0.37 -0.6
2,754,437 - HP15_2604 0.38 -2.2
2,754,486 + HP15_2604 0.42 +0.8

Or see this region's nucleotide sequence