Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2496 and HP15_2497 are separated by 20 nucleotides HP15_2497 and HP15_2498 are separated by 83 nucleotides
HP15_2496: HP15_2496 - HflC, at 2,635,750 to 2,636,607
_2496
HP15_2497: HP15_2497 - HflK, at 2,636,628 to 2,637,815
_2497
HP15_2498: HP15_2498 - small GTP-binding protein, at 2,637,899 to 2,639,197
_2498
Position (kb)
2636
2637
2638 Strain fitness (log2 ratio)
-2
-1
0
1 at 2635.747 kb on + strand at 2635.755 kb on - strand at 2635.953 kb on + strand, within HP15_2496 at 2636.179 kb on + strand, within HP15_2496 at 2636.187 kb on - strand, within HP15_2496 at 2636.498 kb on - strand, within HP15_2496 at 2636.516 kb on + strand, within HP15_2496 at 2636.647 kb on + strand at 2636.817 kb on - strand, within HP15_2497 at 2637.209 kb on + strand, within HP15_2497 at 2637.274 kb on - strand, within HP15_2497 at 2637.288 kb on + strand, within HP15_2497 at 2637.356 kb on - strand, within HP15_2497 at 2637.425 kb on + strand, within HP15_2497 at 2637.547 kb on + strand, within HP15_2497 at 2637.708 kb on - strand at 2637.766 kb on + strand at 2637.820 kb on - strand at 2637.921 kb on - strand at 2638.113 kb on + strand, within HP15_2498 at 2638.145 kb on + strand, within HP15_2498 at 2638.278 kb on + strand, within HP15_2498 at 2638.278 kb on + strand, within HP15_2498 at 2638.299 kb on + strand, within HP15_2498 at 2638.299 kb on + strand, within HP15_2498 at 2638.307 kb on - strand, within HP15_2498 at 2638.307 kb on - strand, within HP15_2498 at 2638.333 kb on + strand, within HP15_2498 at 2638.333 kb on + strand, within HP15_2498 at 2638.443 kb on - strand, within HP15_2498 at 2638.522 kb on - strand, within HP15_2498 at 2638.553 kb on - strand, within HP15_2498 at 2638.580 kb on + strand, within HP15_2498 at 2638.680 kb on + strand, within HP15_2498 at 2638.732 kb on - strand, within HP15_2498 at 2638.742 kb on - strand, within HP15_2498
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,635,747 + -0.4 2,635,755 - +0.4 2,635,953 + HP15_2496 0.24 -1.4 2,636,179 + HP15_2496 0.50 -0.1 2,636,187 - HP15_2496 0.51 +0.1 2,636,498 - HP15_2496 0.87 -2.3 2,636,516 + HP15_2496 0.89 -0.9 2,636,647 + +0.1 2,636,817 - HP15_2497 0.16 -0.2 2,637,209 + HP15_2497 0.49 -1.2 2,637,274 - HP15_2497 0.54 -0.8 2,637,288 + HP15_2497 0.56 -1.1 2,637,356 - HP15_2497 0.61 -1.8 2,637,425 + HP15_2497 0.67 +0.2 2,637,547 + HP15_2497 0.77 -1.9 2,637,708 - +0.7 2,637,766 + -1.7 2,637,820 - +1.6 2,637,921 - -0.5 2,638,113 + HP15_2498 0.16 +0.0 2,638,145 + HP15_2498 0.19 -0.0 2,638,278 + HP15_2498 0.29 -0.6 2,638,278 + HP15_2498 0.29 +1.0 2,638,299 + HP15_2498 0.31 -1.2 2,638,299 + HP15_2498 0.31 -1.4 2,638,307 - HP15_2498 0.31 -0.1 2,638,307 - HP15_2498 0.31 -0.5 2,638,333 + HP15_2498 0.33 +1.0 2,638,333 + HP15_2498 0.33 -0.1 2,638,443 - HP15_2498 0.42 +1.6 2,638,522 - HP15_2498 0.48 -0.5 2,638,553 - HP15_2498 0.50 -1.0 2,638,580 + HP15_2498 0.52 +1.4 2,638,680 + HP15_2498 0.60 -0.2 2,638,732 - HP15_2498 0.64 +0.8 2,638,742 - HP15_2498 0.65 +1.0
Or see this region's nucleotide sequence