Strain Fitness in Marinobacter adhaerens HP15 around HP15_2497

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2496 and HP15_2497 are separated by 20 nucleotidesHP15_2497 and HP15_2498 are separated by 83 nucleotides HP15_2496: HP15_2496 - HflC, at 2,635,750 to 2,636,607 _2496 HP15_2497: HP15_2497 - HflK, at 2,636,628 to 2,637,815 _2497 HP15_2498: HP15_2498 - small GTP-binding protein, at 2,637,899 to 2,639,197 _2498 Position (kb) 2636 2637 2638Strain fitness (log2 ratio) -2 -1 0 1at 2635.747 kb on + strandat 2635.755 kb on - strandat 2635.953 kb on + strand, within HP15_2496at 2636.179 kb on + strand, within HP15_2496at 2636.187 kb on - strand, within HP15_2496at 2636.498 kb on - strand, within HP15_2496at 2636.516 kb on + strand, within HP15_2496at 2636.647 kb on + strandat 2636.817 kb on - strand, within HP15_2497at 2637.209 kb on + strand, within HP15_2497at 2637.274 kb on - strand, within HP15_2497at 2637.288 kb on + strand, within HP15_2497at 2637.356 kb on - strand, within HP15_2497at 2637.425 kb on + strand, within HP15_2497at 2637.547 kb on + strand, within HP15_2497at 2637.708 kb on - strandat 2637.766 kb on + strandat 2637.820 kb on - strandat 2637.921 kb on - strandat 2638.113 kb on + strand, within HP15_2498at 2638.145 kb on + strand, within HP15_2498at 2638.278 kb on + strand, within HP15_2498at 2638.278 kb on + strand, within HP15_2498at 2638.299 kb on + strand, within HP15_2498at 2638.299 kb on + strand, within HP15_2498at 2638.307 kb on - strand, within HP15_2498at 2638.307 kb on - strand, within HP15_2498at 2638.333 kb on + strand, within HP15_2498at 2638.333 kb on + strand, within HP15_2498at 2638.443 kb on - strand, within HP15_2498at 2638.522 kb on - strand, within HP15_2498at 2638.553 kb on - strand, within HP15_2498at 2638.580 kb on + strand, within HP15_2498at 2638.680 kb on + strand, within HP15_2498at 2638.732 kb on - strand, within HP15_2498at 2638.742 kb on - strand, within HP15_2498

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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2,635,747 + -0.4
2,635,755 - +0.4
2,635,953 + HP15_2496 0.24 -1.4
2,636,179 + HP15_2496 0.50 -0.1
2,636,187 - HP15_2496 0.51 +0.1
2,636,498 - HP15_2496 0.87 -2.3
2,636,516 + HP15_2496 0.89 -0.9
2,636,647 + +0.1
2,636,817 - HP15_2497 0.16 -0.2
2,637,209 + HP15_2497 0.49 -1.2
2,637,274 - HP15_2497 0.54 -0.8
2,637,288 + HP15_2497 0.56 -1.1
2,637,356 - HP15_2497 0.61 -1.8
2,637,425 + HP15_2497 0.67 +0.2
2,637,547 + HP15_2497 0.77 -1.9
2,637,708 - +0.7
2,637,766 + -1.7
2,637,820 - +1.6
2,637,921 - -0.5
2,638,113 + HP15_2498 0.16 +0.0
2,638,145 + HP15_2498 0.19 -0.0
2,638,278 + HP15_2498 0.29 -0.6
2,638,278 + HP15_2498 0.29 +1.0
2,638,299 + HP15_2498 0.31 -1.2
2,638,299 + HP15_2498 0.31 -1.4
2,638,307 - HP15_2498 0.31 -0.1
2,638,307 - HP15_2498 0.31 -0.5
2,638,333 + HP15_2498 0.33 +1.0
2,638,333 + HP15_2498 0.33 -0.1
2,638,443 - HP15_2498 0.42 +1.6
2,638,522 - HP15_2498 0.48 -0.5
2,638,553 - HP15_2498 0.50 -1.0
2,638,580 + HP15_2498 0.52 +1.4
2,638,680 + HP15_2498 0.60 -0.2
2,638,732 - HP15_2498 0.64 +0.8
2,638,742 - HP15_2498 0.65 +1.0

Or see this region's nucleotide sequence