Strain Fitness in Marinobacter adhaerens HP15 around HP15_2146

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2144 and HP15_2145 are separated by 11 nucleotidesHP15_2145 and HP15_2146 are separated by 89 nucleotidesHP15_2146 and HP15_2147 are separated by 22 nucleotides HP15_2144: HP15_2144 - redoxin domain protein, at 2,246,676 to 2,247,179 _2144 HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715 _2145 HP15_2146: HP15_2146 - conserved hypothetical protein, secreted, at 2,247,805 to 2,248,557 _2146 HP15_2147: HP15_2147 - conserved hypothetical protein, at 2,248,580 to 2,251,117 _2147 Position (kb) 2247 2248 2249Strain fitness (log2 ratio) -1 0 1at 2246.925 kb on + strand, within HP15_2144at 2247.127 kb on - strand, within HP15_2144at 2247.127 kb on - strand, within HP15_2144at 2247.208 kb on + strandat 2247.213 kb on + strandat 2247.213 kb on + strandat 2247.213 kb on + strandat 2247.221 kb on - strandat 2247.221 kb on - strandat 2247.404 kb on + strand, within HP15_2145at 2247.595 kb on + strand, within HP15_2145at 2247.697 kb on + strandat 2247.784 kb on - strandat 2247.880 kb on + strandat 2247.944 kb on - strand, within HP15_2146at 2247.979 kb on - strand, within HP15_2146at 2248.006 kb on - strand, within HP15_2146at 2248.038 kb on - strand, within HP15_2146at 2248.110 kb on - strand, within HP15_2146at 2248.137 kb on + strand, within HP15_2146at 2248.158 kb on - strand, within HP15_2146at 2248.273 kb on - strand, within HP15_2146at 2248.305 kb on - strand, within HP15_2146at 2248.493 kb on - strandat 2248.518 kb on - strandat 2248.518 kb on - strandat 2248.769 kb on - strandat 2248.903 kb on - strand, within HP15_2147at 2248.903 kb on - strand, within HP15_2147at 2248.919 kb on - strand, within HP15_2147at 2248.927 kb on - strand, within HP15_2147at 2248.943 kb on - strand, within HP15_2147at 2249.029 kb on - strand, within HP15_2147at 2249.048 kb on - strand, within HP15_2147at 2249.098 kb on + strand, within HP15_2147at 2249.111 kb on - strand, within HP15_2147at 2249.291 kb on + strand, within HP15_2147at 2249.299 kb on - strand, within HP15_2147at 2249.299 kb on - strand, within HP15_2147at 2249.303 kb on + strand, within HP15_2147at 2249.405 kb on + strand, within HP15_2147at 2249.413 kb on + strand, within HP15_2147at 2249.421 kb on - strand, within HP15_2147at 2249.446 kb on + strand, within HP15_2147

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
remove
2,246,925 + HP15_2144 0.49 +1.3
2,247,127 - HP15_2144 0.89 -0.5
2,247,127 - HP15_2144 0.89 -1.3
2,247,208 + +0.7
2,247,213 + +1.2
2,247,213 + +0.9
2,247,213 + -0.1
2,247,221 - -0.5
2,247,221 - +0.9
2,247,404 + HP15_2145 0.41 +0.1
2,247,595 + HP15_2145 0.77 +0.6
2,247,697 + -0.5
2,247,784 - +0.5
2,247,880 + +1.2
2,247,944 - HP15_2146 0.18 -0.3
2,247,979 - HP15_2146 0.23 -0.5
2,248,006 - HP15_2146 0.27 +0.7
2,248,038 - HP15_2146 0.31 -0.1
2,248,110 - HP15_2146 0.41 -0.5
2,248,137 + HP15_2146 0.44 +0.2
2,248,158 - HP15_2146 0.47 -1.1
2,248,273 - HP15_2146 0.62 +0.3
2,248,305 - HP15_2146 0.66 -0.5
2,248,493 - +0.1
2,248,518 - -0.3
2,248,518 - -0.4
2,248,769 - -0.4
2,248,903 - HP15_2147 0.13 +0.8
2,248,903 - HP15_2147 0.13 +0.9
2,248,919 - HP15_2147 0.13 -0.2
2,248,927 - HP15_2147 0.14 +1.2
2,248,943 - HP15_2147 0.14 -0.8
2,249,029 - HP15_2147 0.18 +1.2
2,249,048 - HP15_2147 0.18 +1.6
2,249,098 + HP15_2147 0.20 +0.4
2,249,111 - HP15_2147 0.21 +1.1
2,249,291 + HP15_2147 0.28 +0.9
2,249,299 - HP15_2147 0.28 -1.0
2,249,299 - HP15_2147 0.28 -0.0
2,249,303 + HP15_2147 0.28 +1.6
2,249,405 + HP15_2147 0.33 +0.1
2,249,413 + HP15_2147 0.33 -0.6
2,249,421 - HP15_2147 0.33 -0.6
2,249,446 + HP15_2147 0.34 +0.7

Or see this region's nucleotide sequence