Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2144 and HP15_2145 are separated by 11 nucleotides HP15_2145 and HP15_2146 are separated by 89 nucleotides HP15_2146 and HP15_2147 are separated by 22 nucleotides
HP15_2144: HP15_2144 - redoxin domain protein, at 2,246,676 to 2,247,179
_2144
HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715
_2145
HP15_2146: HP15_2146 - conserved hypothetical protein, secreted, at 2,247,805 to 2,248,557
_2146
HP15_2147: HP15_2147 - conserved hypothetical protein, at 2,248,580 to 2,251,117
_2147
Position (kb)
2247
2248
2249 Strain fitness (log2 ratio)
-1
0
1 at 2246.925 kb on + strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.208 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.221 kb on - strand at 2247.221 kb on - strand at 2247.404 kb on + strand, within HP15_2145 at 2247.595 kb on + strand, within HP15_2145 at 2247.697 kb on + strand at 2247.784 kb on - strand at 2247.880 kb on + strand at 2247.944 kb on - strand, within HP15_2146 at 2247.979 kb on - strand, within HP15_2146 at 2248.006 kb on - strand, within HP15_2146 at 2248.038 kb on - strand, within HP15_2146 at 2248.110 kb on - strand, within HP15_2146 at 2248.137 kb on + strand, within HP15_2146 at 2248.158 kb on - strand, within HP15_2146 at 2248.273 kb on - strand, within HP15_2146 at 2248.305 kb on - strand, within HP15_2146 at 2248.493 kb on - strand at 2248.518 kb on - strand at 2248.518 kb on - strand at 2248.769 kb on - strand at 2248.903 kb on - strand, within HP15_2147 at 2248.903 kb on - strand, within HP15_2147 at 2248.919 kb on - strand, within HP15_2147 at 2248.927 kb on - strand, within HP15_2147 at 2248.943 kb on - strand, within HP15_2147 at 2249.029 kb on - strand, within HP15_2147 at 2249.048 kb on - strand, within HP15_2147 at 2249.098 kb on + strand, within HP15_2147 at 2249.111 kb on - strand, within HP15_2147 at 2249.291 kb on + strand, within HP15_2147 at 2249.299 kb on - strand, within HP15_2147 at 2249.299 kb on - strand, within HP15_2147 at 2249.303 kb on + strand, within HP15_2147 at 2249.405 kb on + strand, within HP15_2147 at 2249.413 kb on + strand, within HP15_2147 at 2249.421 kb on - strand, within HP15_2147 at 2249.446 kb on + strand, within HP15_2147
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,246,925 + HP15_2144 0.49 +1.3 2,247,127 - HP15_2144 0.89 -0.5 2,247,127 - HP15_2144 0.89 -1.3 2,247,208 + +0.7 2,247,213 + +1.2 2,247,213 + +0.9 2,247,213 + -0.1 2,247,221 - -0.5 2,247,221 - +0.9 2,247,404 + HP15_2145 0.41 +0.1 2,247,595 + HP15_2145 0.77 +0.6 2,247,697 + -0.5 2,247,784 - +0.5 2,247,880 + +1.2 2,247,944 - HP15_2146 0.18 -0.3 2,247,979 - HP15_2146 0.23 -0.5 2,248,006 - HP15_2146 0.27 +0.7 2,248,038 - HP15_2146 0.31 -0.1 2,248,110 - HP15_2146 0.41 -0.5 2,248,137 + HP15_2146 0.44 +0.2 2,248,158 - HP15_2146 0.47 -1.1 2,248,273 - HP15_2146 0.62 +0.3 2,248,305 - HP15_2146 0.66 -0.5 2,248,493 - +0.1 2,248,518 - -0.3 2,248,518 - -0.4 2,248,769 - -0.4 2,248,903 - HP15_2147 0.13 +0.8 2,248,903 - HP15_2147 0.13 +0.9 2,248,919 - HP15_2147 0.13 -0.2 2,248,927 - HP15_2147 0.14 +1.2 2,248,943 - HP15_2147 0.14 -0.8 2,249,029 - HP15_2147 0.18 +1.2 2,249,048 - HP15_2147 0.18 +1.6 2,249,098 + HP15_2147 0.20 +0.4 2,249,111 - HP15_2147 0.21 +1.1 2,249,291 + HP15_2147 0.28 +0.9 2,249,299 - HP15_2147 0.28 -1.0 2,249,299 - HP15_2147 0.28 -0.0 2,249,303 + HP15_2147 0.28 +1.6 2,249,405 + HP15_2147 0.33 +0.1 2,249,413 + HP15_2147 0.33 -0.6 2,249,421 - HP15_2147 0.33 -0.6 2,249,446 + HP15_2147 0.34 +0.7
Or see this region's nucleotide sequence