Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2143 and HP15_2144 are separated by 292 nucleotides HP15_2144 and HP15_2145 are separated by 11 nucleotides HP15_2145 and HP15_2146 are separated by 89 nucleotides
HP15_2143: HP15_2143 - conserved hypothetical protein, at 2,245,274 to 2,246,383
_2143
HP15_2144: HP15_2144 - redoxin domain protein, at 2,246,676 to 2,247,179
_2144
HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715
_2145
HP15_2146: HP15_2146 - conserved hypothetical protein, secreted, at 2,247,805 to 2,248,557
_2146
Position (kb)
2246
2247
2248 Strain fitness (log2 ratio)
-1
0
1
2 at 2245.850 kb on + strand, within HP15_2143 at 2245.857 kb on + strand, within HP15_2143 at 2246.058 kb on + strand, within HP15_2143 at 2246.158 kb on + strand, within HP15_2143 at 2246.178 kb on - strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.230 kb on - strand, within HP15_2143 at 2246.257 kb on - strand, within HP15_2143 at 2246.404 kb on + strand at 2246.412 kb on - strand at 2246.793 kb on + strand, within HP15_2144 at 2246.925 kb on + strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.208 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.221 kb on - strand at 2247.221 kb on - strand at 2247.404 kb on + strand, within HP15_2145 at 2247.595 kb on + strand, within HP15_2145 at 2247.697 kb on + strand at 2247.784 kb on - strand at 2247.880 kb on + strand at 2247.944 kb on - strand, within HP15_2146 at 2247.979 kb on - strand, within HP15_2146 at 2248.006 kb on - strand, within HP15_2146 at 2248.038 kb on - strand, within HP15_2146 at 2248.110 kb on - strand, within HP15_2146 at 2248.137 kb on + strand, within HP15_2146 at 2248.158 kb on - strand, within HP15_2146
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 2,245,850 + HP15_2143 0.52 +1.2 2,245,857 + HP15_2143 0.53 +2.1 2,246,058 + HP15_2143 0.71 +1.7 2,246,158 + HP15_2143 0.80 +1.2 2,246,178 - HP15_2143 0.81 +1.2 2,246,217 + HP15_2143 0.85 -1.0 2,246,217 + HP15_2143 0.85 +0.2 2,246,230 - HP15_2143 0.86 -0.7 2,246,257 - HP15_2143 0.89 +0.0 2,246,404 + -1.5 2,246,412 - -0.1 2,246,793 + HP15_2144 0.23 -0.2 2,246,925 + HP15_2144 0.49 +1.3 2,247,127 - HP15_2144 0.89 -0.5 2,247,127 - HP15_2144 0.89 -1.3 2,247,208 + +0.7 2,247,213 + +1.2 2,247,213 + +0.9 2,247,213 + -0.1 2,247,221 - -0.5 2,247,221 - +0.9 2,247,404 + HP15_2145 0.41 +0.1 2,247,595 + HP15_2145 0.77 +0.6 2,247,697 + -0.5 2,247,784 - +0.5 2,247,880 + +1.2 2,247,944 - HP15_2146 0.18 -0.3 2,247,979 - HP15_2146 0.23 -0.5 2,248,006 - HP15_2146 0.27 +0.7 2,248,038 - HP15_2146 0.31 -0.1 2,248,110 - HP15_2146 0.41 -0.5 2,248,137 + HP15_2146 0.44 +0.2 2,248,158 - HP15_2146 0.47 -1.1
Or see this region's nucleotide sequence