Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_178 and HP15_177 overlap by 18 nucleotides HP15_177 and HP15_179 are separated by 104 nucleotides HP15_179 and HP15_180 overlap by 7 nucleotides
HP15_178: HP15_178 - copper-translocating P-type ATPase, at 167,790 to 170,063
_178
HP15_177: HP15_177 - hypothetical protein, at 170,046 to 170,189
_177
HP15_179: HP15_179 - hypothetical protein, at 170,294 to 170,401
_179
HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747
_180
Position (kb) 170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.053 kb on + strand, within HP15_178 at 169.063 kb on + strand, within HP15_178 at 169.063 kb on + strand, within HP15_178 at 169.071 kb on - strand, within HP15_178 at 169.190 kb on + strand, within HP15_178 at 169.194 kb on + strand, within HP15_178 at 169.223 kb on - strand, within HP15_178 at 169.250 kb on - strand, within HP15_178 at 169.279 kb on + strand, within HP15_178 at 169.280 kb on + strand, within HP15_178 at 169.287 kb on - strand, within HP15_178 at 169.301 kb on + strand, within HP15_178 at 169.326 kb on - strand, within HP15_178 at 169.344 kb on - strand, within HP15_178 at 169.495 kb on + strand, within HP15_178 at 169.503 kb on - strand, within HP15_178 at 169.516 kb on - strand, within HP15_178 at 169.520 kb on + strand, within HP15_178 at 169.536 kb on - strand, within HP15_178 at 169.536 kb on - strand, within HP15_178 at 169.648 kb on - strand, within HP15_178 at 169.651 kb on + strand, within HP15_178 at 169.687 kb on + strand, within HP15_178 at 169.695 kb on - strand, within HP15_178 at 169.695 kb on - strand, within HP15_178 at 169.747 kb on + strand, within HP15_178 at 169.751 kb on + strand, within HP15_178 at 169.754 kb on - strand, within HP15_178 at 169.782 kb on + strand, within HP15_178 at 169.821 kb on - strand, within HP15_178 at 169.835 kb on + strand, within HP15_178 at 169.899 kb on + strand at 169.899 kb on + strand at 169.899 kb on + strand at 169.899 kb on + strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 169.907 kb on - strand at 170.037 kb on - strand at 170.138 kb on - strand, within HP15_177 at 170.159 kb on - strand, within HP15_177 at 170.231 kb on - strand at 170.246 kb on + strand at 170.592 kb on + strand, within HP15_180 at 170.600 kb on - strand, within HP15_180 at 170.644 kb on - strand, within HP15_180 at 170.653 kb on + strand, within HP15_180 at 170.708 kb on - strand, within HP15_180 at 170.718 kb on + strand, within HP15_180 at 170.718 kb on + strand, within HP15_180 at 170.718 kb on + strand, within HP15_180 at 170.723 kb on + strand, within HP15_180 at 170.726 kb on - strand, within HP15_180 at 170.733 kb on - strand, within HP15_180 at 170.738 kb on + strand, within HP15_180 at 170.738 kb on + strand, within HP15_180 at 170.738 kb on - strand, within HP15_180 at 170.746 kb on - strand, within HP15_180 at 170.746 kb on - strand, within HP15_180 at 170.792 kb on - strand, within HP15_180 at 171.008 kb on + strand, within HP15_180 at 171.056 kb on + strand, within HP15_180 at 171.099 kb on - strand, within HP15_180
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 169,053 + HP15_178 0.56 +1.5 169,063 + HP15_178 0.56 +0.2 169,063 + HP15_178 0.56 +1.6 169,071 - HP15_178 0.56 +1.0 169,190 + HP15_178 0.62 +1.4 169,194 + HP15_178 0.62 -0.2 169,223 - HP15_178 0.63 -0.5 169,250 - HP15_178 0.64 -0.3 169,279 + HP15_178 0.65 +1.8 169,280 + HP15_178 0.66 -2.9 169,287 - HP15_178 0.66 +1.0 169,301 + HP15_178 0.66 +0.1 169,326 - HP15_178 0.68 -0.3 169,344 - HP15_178 0.68 -0.4 169,495 + HP15_178 0.75 -1.3 169,503 - HP15_178 0.75 +0.8 169,516 - HP15_178 0.76 +0.2 169,520 + HP15_178 0.76 -2.4 169,536 - HP15_178 0.77 -0.3 169,536 - HP15_178 0.77 +0.1 169,648 - HP15_178 0.82 -0.6 169,651 + HP15_178 0.82 +0.2 169,687 + HP15_178 0.83 +0.7 169,695 - HP15_178 0.84 +1.0 169,695 - HP15_178 0.84 -0.6 169,747 + HP15_178 0.86 +0.1 169,751 + HP15_178 0.86 +0.7 169,754 - HP15_178 0.86 +0.5 169,782 + HP15_178 0.88 +1.0 169,821 - HP15_178 0.89 +0.0 169,835 + HP15_178 0.90 -0.4 169,899 + -0.2 169,899 + +0.9 169,899 + -0.8 169,899 + -1.2 169,907 - +0.7 169,907 - +1.0 169,907 - +0.4 169,907 - +1.2 169,907 - -0.4 169,907 - +0.7 170,037 - +0.4 170,138 - HP15_177 0.64 -1.5 170,159 - HP15_177 0.78 +1.8 170,231 - -0.1 170,246 + -0.0 170,592 + HP15_180 0.15 -0.3 170,600 - HP15_180 0.15 -0.1 170,644 - HP15_180 0.18 +1.2 170,653 + HP15_180 0.19 -0.2 170,708 - HP15_180 0.23 -0.3 170,718 + HP15_180 0.24 -0.1 170,718 + HP15_180 0.24 -0.8 170,718 + HP15_180 0.24 +1.8 170,723 + HP15_180 0.24 -0.2 170,726 - HP15_180 0.24 +0.9 170,733 - HP15_180 0.25 -0.2 170,738 + HP15_180 0.25 +1.4 170,738 + HP15_180 0.25 -0.7 170,738 - HP15_180 0.25 +0.4 170,746 - HP15_180 0.26 -0.3 170,746 - HP15_180 0.26 +0.1 170,792 - HP15_180 0.29 +0.4 171,008 + HP15_180 0.45 -0.5 171,056 + HP15_180 0.49 -1.5 171,099 - HP15_180 0.52 +0.9
Or see this region's nucleotide sequence