Strain Fitness in Marinobacter adhaerens HP15 around HP15_1539

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1538 and HP15_1539 are separated by 12 nucleotidesHP15_1539 and HP15_1540 are separated by 73 nucleotides HP15_1538: HP15_1538 - conserved hypothetical protein, at 1,622,655 to 1,624,124 _1538 HP15_1539: HP15_1539 - CBS domain containing protein, at 1,624,137 to 1,624,769 _1539 HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741 _1540 Position (kb) 1624 1625Strain fitness (log2 ratio) -1 0 1 2at 1623.157 kb on + strand, within HP15_1538at 1623.212 kb on - strand, within HP15_1538at 1623.653 kb on + strand, within HP15_1538at 1623.661 kb on - strand, within HP15_1538at 1623.710 kb on + strand, within HP15_1538at 1623.710 kb on + strand, within HP15_1538at 1623.710 kb on + strand, within HP15_1538at 1623.905 kb on - strand, within HP15_1538at 1623.986 kb on + strandat 1624.093 kb on - strandat 1624.584 kb on - strand, within HP15_1539at 1624.699 kb on + strand, within HP15_1539at 1624.701 kb on - strand, within HP15_1539at 1624.804 kb on + strandat 1624.964 kb on + strandat 1624.972 kb on - strandat 1624.999 kb on - strandat 1625.148 kb on + strand, within HP15_1540at 1625.253 kb on + strand, within HP15_1540at 1625.394 kb on - strand, within HP15_1540at 1625.489 kb on + strand, within HP15_1540at 1625.627 kb on - strand, within HP15_1540

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,623,157 + HP15_1538 0.34 -0.0
1,623,212 - HP15_1538 0.38 -0.1
1,623,653 + HP15_1538 0.68 -0.6
1,623,661 - HP15_1538 0.68 -0.4
1,623,710 + HP15_1538 0.72 -0.0
1,623,710 + HP15_1538 0.72 -0.4
1,623,710 + HP15_1538 0.72 -0.5
1,623,905 - HP15_1538 0.85 +0.7
1,623,986 + +0.6
1,624,093 - +0.3
1,624,584 - HP15_1539 0.71 +1.8
1,624,699 + HP15_1539 0.89 +0.3
1,624,701 - HP15_1539 0.89 -0.1
1,624,804 + +0.5
1,624,964 + -1.1
1,624,972 - -0.7
1,624,999 - +1.0
1,625,148 + HP15_1540 0.16 +0.1
1,625,253 + HP15_1540 0.22 +0.1
1,625,394 - HP15_1540 0.29 -0.8
1,625,489 + HP15_1540 0.34 +0.9
1,625,627 - HP15_1540 0.41 -0.7

Or see this region's nucleotide sequence