Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_129 and HP15_130 are separated by 104 nucleotides HP15_130 and HP15_131 are separated by 71 nucleotides HP15_131 and HP15_132 are separated by 302 nucleotides
HP15_129: HP15_129 - RecT protein, at 135,718 to 136,674
_129
HP15_130: HP15_130 - conserved hypothetical protein, at 136,779 to 137,042
_130
HP15_131: HP15_131 - endonuclease-like phage-related protein, at 137,114 to 138,118
_131
HP15_132: HP15_132 - CobS protein, at 138,421 to 139,380
_132
Position (kb)
137
138
139 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 136.129 kb on + strand, within HP15_129 at 136.148 kb on + strand, within HP15_129 at 136.404 kb on + strand, within HP15_129 at 136.409 kb on + strand, within HP15_129 at 136.501 kb on + strand, within HP15_129 at 136.501 kb on - strand, within HP15_129 at 136.506 kb on - strand, within HP15_129 at 136.509 kb on - strand, within HP15_129 at 136.509 kb on - strand, within HP15_129 at 136.511 kb on - strand, within HP15_129 at 136.511 kb on - strand, within HP15_129 at 136.511 kb on - strand, within HP15_129 at 136.600 kb on + strand at 136.605 kb on + strand at 136.613 kb on - strand at 136.615 kb on - strand at 136.626 kb on + strand at 136.646 kb on - strand at 136.651 kb on - strand at 136.656 kb on - strand at 136.676 kb on + strand at 136.693 kb on - strand at 136.706 kb on - strand at 136.803 kb on - strand at 136.814 kb on + strand, within HP15_130 at 136.860 kb on + strand, within HP15_130 at 136.865 kb on - strand, within HP15_130 at 136.981 kb on + strand, within HP15_130 at 136.991 kb on + strand, within HP15_130 at 136.999 kb on - strand, within HP15_130 at 137.009 kb on - strand, within HP15_130 at 137.027 kb on + strand at 137.029 kb on + strand at 137.035 kb on - strand at 137.038 kb on + strand at 137.095 kb on - strand at 137.096 kb on + strand at 137.130 kb on + strand at 137.169 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.216 kb on - strand, within HP15_131 at 137.216 kb on - strand, within HP15_131 at 137.274 kb on - strand, within HP15_131 at 137.289 kb on - strand, within HP15_131 at 137.299 kb on + strand, within HP15_131 at 137.423 kb on + strand, within HP15_131 at 137.472 kb on - strand, within HP15_131 at 137.472 kb on - strand, within HP15_131 at 137.523 kb on - strand, within HP15_131 at 137.536 kb on + strand, within HP15_131 at 137.539 kb on - strand, within HP15_131 at 137.591 kb on + strand, within HP15_131 at 137.631 kb on + strand, within HP15_131 at 137.683 kb on + strand, within HP15_131 at 137.691 kb on - strand, within HP15_131 at 137.691 kb on - strand, within HP15_131 at 137.735 kb on - strand, within HP15_131 at 137.787 kb on - strand, within HP15_131 at 137.803 kb on + strand, within HP15_131 at 137.811 kb on - strand, within HP15_131 at 137.832 kb on - strand, within HP15_131 at 137.883 kb on - strand, within HP15_131 at 137.893 kb on - strand, within HP15_131 at 137.908 kb on - strand, within HP15_131 at 137.963 kb on + strand, within HP15_131 at 137.968 kb on + strand, within HP15_131 at 137.976 kb on + strand, within HP15_131 at 138.072 kb on - strand at 138.096 kb on - strand at 138.176 kb on + strand at 138.181 kb on + strand at 138.199 kb on - strand at 138.310 kb on - strand at 138.440 kb on - strand at 138.457 kb on + strand at 138.574 kb on + strand, within HP15_132 at 138.637 kb on + strand, within HP15_132 at 138.642 kb on - strand, within HP15_132 at 138.645 kb on - strand, within HP15_132 at 138.680 kb on + strand, within HP15_132 at 138.693 kb on - strand, within HP15_132 at 138.698 kb on - strand, within HP15_132 at 138.698 kb on - strand, within HP15_132 at 138.707 kb on + strand, within HP15_132 at 138.849 kb on + strand, within HP15_132 at 138.995 kb on + strand, within HP15_132 at 139.003 kb on - strand, within HP15_132 at 139.019 kb on + strand, within HP15_132 at 139.050 kb on - strand, within HP15_132 at 139.102 kb on - strand, within HP15_132
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 136,129 + HP15_129 0.43 -0.4 136,148 + HP15_129 0.45 -0.3 136,404 + HP15_129 0.72 +1.2 136,409 + HP15_129 0.72 +0.4 136,501 + HP15_129 0.82 +1.4 136,501 - HP15_129 0.82 +0.7 136,506 - HP15_129 0.82 +1.7 136,509 - HP15_129 0.83 +0.3 136,509 - HP15_129 0.83 -2.1 136,511 - HP15_129 0.83 -0.3 136,511 - HP15_129 0.83 +1.3 136,511 - HP15_129 0.83 +0.8 136,600 + -0.4 136,605 + +1.9 136,613 - +1.1 136,615 - -3.1 136,626 + +0.2 136,646 - -0.0 136,651 - +0.8 136,656 - -0.3 136,676 + +0.6 136,693 - -0.6 136,706 - -0.2 136,803 - -0.2 136,814 + HP15_130 0.13 +0.2 136,860 + HP15_130 0.31 -0.4 136,865 - HP15_130 0.33 -0.3 136,981 + HP15_130 0.77 +2.4 136,991 + HP15_130 0.80 +0.3 136,999 - HP15_130 0.83 -0.5 137,009 - HP15_130 0.87 +1.5 137,027 + -0.1 137,029 + -0.7 137,035 - +1.0 137,038 + -0.2 137,095 - -1.2 137,096 + -0.5 137,130 + +0.6 137,169 + +0.6 137,208 + +0.3 137,208 + -0.5 137,208 + +2.2 137,208 + -1.3 137,208 + +0.3 137,208 + -1.3 137,216 - HP15_131 0.10 -0.0 137,216 - HP15_131 0.10 -0.1 137,274 - HP15_131 0.16 +0.8 137,289 - HP15_131 0.17 +0.4 137,299 + HP15_131 0.18 -0.8 137,423 + HP15_131 0.31 -0.3 137,472 - HP15_131 0.36 -0.3 137,472 - HP15_131 0.36 +1.6 137,523 - HP15_131 0.41 -0.2 137,536 + HP15_131 0.42 +0.3 137,539 - HP15_131 0.42 -0.7 137,591 + HP15_131 0.47 -0.2 137,631 + HP15_131 0.51 -0.4 137,683 + HP15_131 0.57 -0.7 137,691 - HP15_131 0.57 -1.3 137,691 - HP15_131 0.57 +0.1 137,735 - HP15_131 0.62 +0.5 137,787 - HP15_131 0.67 +0.7 137,803 + HP15_131 0.69 -0.6 137,811 - HP15_131 0.69 -0.8 137,832 - HP15_131 0.71 -0.2 137,883 - HP15_131 0.77 +1.2 137,893 - HP15_131 0.78 -0.0 137,908 - HP15_131 0.79 -0.1 137,963 + HP15_131 0.84 +0.2 137,968 + HP15_131 0.85 -1.5 137,976 + HP15_131 0.86 +0.6 138,072 - +1.5 138,096 - +0.9 138,176 + -0.7 138,181 + +0.8 138,199 - -1.8 138,310 - -0.2 138,440 - -0.7 138,457 + +0.8 138,574 + HP15_132 0.16 -0.4 138,637 + HP15_132 0.23 -2.4 138,642 - HP15_132 0.23 -0.2 138,645 - HP15_132 0.23 -0.9 138,680 + HP15_132 0.27 -0.5 138,693 - HP15_132 0.28 +0.2 138,698 - HP15_132 0.29 -0.8 138,698 - HP15_132 0.29 -0.9 138,707 + HP15_132 0.30 -0.5 138,849 + HP15_132 0.45 -0.9 138,995 + HP15_132 0.60 -0.2 139,003 - HP15_132 0.61 -0.6 139,019 + HP15_132 0.62 -1.5 139,050 - HP15_132 0.66 -0.2 139,102 - HP15_132 0.71 -0.2
Or see this region's nucleotide sequence