Strain Fitness in Marinobacter adhaerens HP15 around HP15_131

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_129 and HP15_130 are separated by 104 nucleotidesHP15_130 and HP15_131 are separated by 71 nucleotidesHP15_131 and HP15_132 are separated by 302 nucleotides HP15_129: HP15_129 - RecT protein, at 135,718 to 136,674 _129 HP15_130: HP15_130 - conserved hypothetical protein, at 136,779 to 137,042 _130 HP15_131: HP15_131 - endonuclease-like phage-related protein, at 137,114 to 138,118 _131 HP15_132: HP15_132 - CobS protein, at 138,421 to 139,380 _132 Position (kb) 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 136.129 kb on + strand, within HP15_129at 136.148 kb on + strand, within HP15_129at 136.404 kb on + strand, within HP15_129at 136.409 kb on + strand, within HP15_129at 136.501 kb on + strand, within HP15_129at 136.501 kb on - strand, within HP15_129at 136.506 kb on - strand, within HP15_129at 136.509 kb on - strand, within HP15_129at 136.509 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.600 kb on + strandat 136.605 kb on + strandat 136.613 kb on - strandat 136.615 kb on - strandat 136.626 kb on + strandat 136.646 kb on - strandat 136.651 kb on - strandat 136.656 kb on - strandat 136.676 kb on + strandat 136.693 kb on - strandat 136.706 kb on - strandat 136.803 kb on - strandat 136.814 kb on + strand, within HP15_130at 136.860 kb on + strand, within HP15_130at 136.865 kb on - strand, within HP15_130at 136.981 kb on + strand, within HP15_130at 136.991 kb on + strand, within HP15_130at 136.999 kb on - strand, within HP15_130at 137.009 kb on - strand, within HP15_130at 137.027 kb on + strandat 137.029 kb on + strandat 137.035 kb on - strandat 137.038 kb on + strandat 137.095 kb on - strandat 137.096 kb on + strandat 137.130 kb on + strandat 137.169 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.216 kb on - strand, within HP15_131at 137.216 kb on - strand, within HP15_131at 137.274 kb on - strand, within HP15_131at 137.289 kb on - strand, within HP15_131at 137.299 kb on + strand, within HP15_131at 137.423 kb on + strand, within HP15_131at 137.472 kb on - strand, within HP15_131at 137.472 kb on - strand, within HP15_131at 137.523 kb on - strand, within HP15_131at 137.536 kb on + strand, within HP15_131at 137.539 kb on - strand, within HP15_131at 137.591 kb on + strand, within HP15_131at 137.631 kb on + strand, within HP15_131at 137.683 kb on + strand, within HP15_131at 137.691 kb on - strand, within HP15_131at 137.691 kb on - strand, within HP15_131at 137.735 kb on - strand, within HP15_131at 137.787 kb on - strand, within HP15_131at 137.803 kb on + strand, within HP15_131at 137.811 kb on - strand, within HP15_131at 137.832 kb on - strand, within HP15_131at 137.883 kb on - strand, within HP15_131at 137.893 kb on - strand, within HP15_131at 137.908 kb on - strand, within HP15_131at 137.963 kb on + strand, within HP15_131at 137.968 kb on + strand, within HP15_131at 137.976 kb on + strand, within HP15_131at 138.072 kb on - strandat 138.096 kb on - strandat 138.176 kb on + strandat 138.181 kb on + strandat 138.199 kb on - strandat 138.310 kb on - strandat 138.440 kb on - strandat 138.457 kb on + strandat 138.574 kb on + strand, within HP15_132at 138.637 kb on + strand, within HP15_132at 138.642 kb on - strand, within HP15_132at 138.645 kb on - strand, within HP15_132at 138.680 kb on + strand, within HP15_132at 138.693 kb on - strand, within HP15_132at 138.698 kb on - strand, within HP15_132at 138.698 kb on - strand, within HP15_132at 138.707 kb on + strand, within HP15_132at 138.849 kb on + strand, within HP15_132at 138.995 kb on + strand, within HP15_132at 139.003 kb on - strand, within HP15_132at 139.019 kb on + strand, within HP15_132at 139.050 kb on - strand, within HP15_132at 139.102 kb on - strand, within HP15_132

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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136,129 + HP15_129 0.43 -0.4
136,148 + HP15_129 0.45 -0.3
136,404 + HP15_129 0.72 +1.2
136,409 + HP15_129 0.72 +0.4
136,501 + HP15_129 0.82 +1.4
136,501 - HP15_129 0.82 +0.7
136,506 - HP15_129 0.82 +1.7
136,509 - HP15_129 0.83 +0.3
136,509 - HP15_129 0.83 -2.1
136,511 - HP15_129 0.83 -0.3
136,511 - HP15_129 0.83 +1.3
136,511 - HP15_129 0.83 +0.8
136,600 + -0.4
136,605 + +1.9
136,613 - +1.1
136,615 - -3.1
136,626 + +0.2
136,646 - -0.0
136,651 - +0.8
136,656 - -0.3
136,676 + +0.6
136,693 - -0.6
136,706 - -0.2
136,803 - -0.2
136,814 + HP15_130 0.13 +0.2
136,860 + HP15_130 0.31 -0.4
136,865 - HP15_130 0.33 -0.3
136,981 + HP15_130 0.77 +2.4
136,991 + HP15_130 0.80 +0.3
136,999 - HP15_130 0.83 -0.5
137,009 - HP15_130 0.87 +1.5
137,027 + -0.1
137,029 + -0.7
137,035 - +1.0
137,038 + -0.2
137,095 - -1.2
137,096 + -0.5
137,130 + +0.6
137,169 + +0.6
137,208 + +0.3
137,208 + -0.5
137,208 + +2.2
137,208 + -1.3
137,208 + +0.3
137,208 + -1.3
137,216 - HP15_131 0.10 -0.0
137,216 - HP15_131 0.10 -0.1
137,274 - HP15_131 0.16 +0.8
137,289 - HP15_131 0.17 +0.4
137,299 + HP15_131 0.18 -0.8
137,423 + HP15_131 0.31 -0.3
137,472 - HP15_131 0.36 -0.3
137,472 - HP15_131 0.36 +1.6
137,523 - HP15_131 0.41 -0.2
137,536 + HP15_131 0.42 +0.3
137,539 - HP15_131 0.42 -0.7
137,591 + HP15_131 0.47 -0.2
137,631 + HP15_131 0.51 -0.4
137,683 + HP15_131 0.57 -0.7
137,691 - HP15_131 0.57 -1.3
137,691 - HP15_131 0.57 +0.1
137,735 - HP15_131 0.62 +0.5
137,787 - HP15_131 0.67 +0.7
137,803 + HP15_131 0.69 -0.6
137,811 - HP15_131 0.69 -0.8
137,832 - HP15_131 0.71 -0.2
137,883 - HP15_131 0.77 +1.2
137,893 - HP15_131 0.78 -0.0
137,908 - HP15_131 0.79 -0.1
137,963 + HP15_131 0.84 +0.2
137,968 + HP15_131 0.85 -1.5
137,976 + HP15_131 0.86 +0.6
138,072 - +1.5
138,096 - +0.9
138,176 + -0.7
138,181 + +0.8
138,199 - -1.8
138,310 - -0.2
138,440 - -0.7
138,457 + +0.8
138,574 + HP15_132 0.16 -0.4
138,637 + HP15_132 0.23 -2.4
138,642 - HP15_132 0.23 -0.2
138,645 - HP15_132 0.23 -0.9
138,680 + HP15_132 0.27 -0.5
138,693 - HP15_132 0.28 +0.2
138,698 - HP15_132 0.29 -0.8
138,698 - HP15_132 0.29 -0.9
138,707 + HP15_132 0.30 -0.5
138,849 + HP15_132 0.45 -0.9
138,995 + HP15_132 0.60 -0.2
139,003 - HP15_132 0.61 -0.6
139,019 + HP15_132 0.62 -1.5
139,050 - HP15_132 0.66 -0.2
139,102 - HP15_132 0.71 -0.2

Or see this region's nucleotide sequence