Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1066 and HP15_1067 are separated by 163 nucleotides HP15_1067 and HP15_1068 are separated by 46 nucleotides
HP15_1066: HP15_1066 - secreted protein containing DUF1329, at 1,091,555 to 1,092,943
_1066
HP15_1067: HP15_1067 - BNR/Asp-box repeat protein, at 1,093,107 to 1,094,240
_1067
HP15_1068: HP15_1068 - transporter, at 1,094,287 to 1,096,671
_1068
Position (kb)
1093
1094
1095 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1092.224 kb on + strand, within HP15_1066 at 1092.227 kb on - strand, within HP15_1066 at 1092.301 kb on - strand, within HP15_1066 at 1092.309 kb on + strand, within HP15_1066 at 1092.377 kb on + strand, within HP15_1066 at 1092.378 kb on + strand, within HP15_1066 at 1092.458 kb on + strand, within HP15_1066 at 1092.675 kb on + strand, within HP15_1066 at 1092.747 kb on + strand, within HP15_1066 at 1092.776 kb on + strand, within HP15_1066 at 1092.814 kb on + strand at 1092.822 kb on - strand at 1092.960 kb on - strand at 1093.064 kb on + strand at 1093.064 kb on + strand at 1093.072 kb on - strand at 1093.140 kb on - strand at 1093.148 kb on + strand at 1093.328 kb on + strand, within HP15_1067 at 1093.388 kb on - strand, within HP15_1067 at 1093.574 kb on + strand, within HP15_1067 at 1093.724 kb on + strand, within HP15_1067 at 1093.907 kb on + strand, within HP15_1067 at 1093.907 kb on + strand, within HP15_1067 at 1093.915 kb on - strand, within HP15_1067 at 1093.915 kb on - strand, within HP15_1067 at 1093.917 kb on + strand, within HP15_1067 at 1093.917 kb on + strand, within HP15_1067 at 1093.920 kb on - strand, within HP15_1067 at 1093.920 kb on - strand, within HP15_1067 at 1093.925 kb on - strand, within HP15_1067 at 1093.939 kb on + strand, within HP15_1067 at 1094.087 kb on + strand, within HP15_1067 at 1094.131 kb on - strand at 1094.289 kb on + strand at 1094.416 kb on + strand at 1094.429 kb on - strand at 1094.438 kb on - strand at 1094.537 kb on - strand, within HP15_1068 at 1094.555 kb on + strand, within HP15_1068 at 1094.555 kb on + strand, within HP15_1068 at 1094.555 kb on + strand, within HP15_1068 at 1094.578 kb on + strand, within HP15_1068 at 1094.597 kb on + strand, within HP15_1068 at 1094.597 kb on + strand, within HP15_1068 at 1094.615 kb on - strand, within HP15_1068 at 1094.639 kb on - strand, within HP15_1068 at 1094.684 kb on + strand, within HP15_1068 at 1094.985 kb on + strand, within HP15_1068 at 1095.063 kb on + strand, within HP15_1068 at 1095.179 kb on - strand, within HP15_1068 at 1095.219 kb on - strand, within HP15_1068 at 1095.226 kb on - strand, within HP15_1068
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15 remove 1,092,224 + HP15_1066 0.48 -0.4 1,092,227 - HP15_1066 0.48 +0.3 1,092,301 - HP15_1066 0.54 +0.0 1,092,309 + HP15_1066 0.54 +1.5 1,092,377 + HP15_1066 0.59 -0.1 1,092,378 + HP15_1066 0.59 +0.7 1,092,458 + HP15_1066 0.65 +1.4 1,092,675 + HP15_1066 0.81 -0.3 1,092,747 + HP15_1066 0.86 +0.1 1,092,776 + HP15_1066 0.88 -0.6 1,092,814 + +0.2 1,092,822 - +0.1 1,092,960 - -0.3 1,093,064 + +0.6 1,093,064 + -1.4 1,093,072 - +1.1 1,093,140 - -1.6 1,093,148 + +0.3 1,093,328 + HP15_1067 0.19 -0.3 1,093,388 - HP15_1067 0.25 -0.9 1,093,574 + HP15_1067 0.41 -0.2 1,093,724 + HP15_1067 0.54 -0.1 1,093,907 + HP15_1067 0.71 -0.1 1,093,907 + HP15_1067 0.71 -2.1 1,093,915 - HP15_1067 0.71 -0.6 1,093,915 - HP15_1067 0.71 +0.9 1,093,917 + HP15_1067 0.71 -1.1 1,093,917 + HP15_1067 0.71 -0.1 1,093,920 - HP15_1067 0.72 -0.8 1,093,920 - HP15_1067 0.72 -0.9 1,093,925 - HP15_1067 0.72 -1.1 1,093,939 + HP15_1067 0.73 -2.6 1,094,087 + HP15_1067 0.86 +0.2 1,094,131 - -2.1 1,094,289 + -0.9 1,094,416 + -0.5 1,094,429 - -1.1 1,094,438 - -0.7 1,094,537 - HP15_1068 0.10 -2.0 1,094,555 + HP15_1068 0.11 -1.0 1,094,555 + HP15_1068 0.11 -1.0 1,094,555 + HP15_1068 0.11 -1.5 1,094,578 + HP15_1068 0.12 +1.0 1,094,597 + HP15_1068 0.13 -0.7 1,094,597 + HP15_1068 0.13 -2.9 1,094,615 - HP15_1068 0.14 -1.2 1,094,639 - HP15_1068 0.15 -1.6 1,094,684 + HP15_1068 0.17 -1.9 1,094,985 + HP15_1068 0.29 -2.2 1,095,063 + HP15_1068 0.33 -2.4 1,095,179 - HP15_1068 0.37 -0.5 1,095,219 - HP15_1068 0.39 +0.2 1,095,226 - HP15_1068 0.39 -0.3
Or see this region's nucleotide sequence