Strain Fitness in Marinobacter adhaerens HP15 around HP15_1045

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1043 and HP15_1044 are separated by 56 nucleotidesHP15_1044 and HP15_1045 are separated by 71 nucleotidesHP15_1045 and HP15_1047 are separated by 114 nucleotides HP15_1043: HP15_1043 - conserved hypothetical protein, at 1,064,096 to 1,065,163 _1043 HP15_1044: HP15_1044 - lysine exporter protein (LYSE/YGGA), at 1,065,220 to 1,065,858 _1044 HP15_1045: HP15_1045 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein, at 1,065,930 to 1,066,289 _1045 HP15_1047: HP15_1047 - DNA mismatch repair protein MutS, at 1,066,404 to 1,069,034 _1047 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -2 -1 0 1 2at 1065.240 kb on + strandat 1065.240 kb on + strandat 1065.240 kb on + strandat 1065.240 kb on + strandat 1065.248 kb on - strandat 1065.248 kb on - strandat 1065.248 kb on - strandat 1065.309 kb on + strand, within HP15_1044at 1065.405 kb on - strand, within HP15_1044at 1065.408 kb on + strand, within HP15_1044at 1065.627 kb on + strand, within HP15_1044at 1065.637 kb on + strand, within HP15_1044at 1065.674 kb on + strand, within HP15_1044at 1065.690 kb on + strand, within HP15_1044at 1065.723 kb on + strand, within HP15_1044at 1065.724 kb on - strand, within HP15_1044at 1065.749 kb on - strand, within HP15_1044at 1065.846 kb on + strandat 1066.331 kb on + strandat 1066.372 kb on + strandat 1066.372 kb on + strandat 1066.391 kb on + strandat 1066.399 kb on - strandat 1066.427 kb on - strandat 1066.509 kb on - strandat 1066.516 kb on - strandat 1066.582 kb on - strandat 1066.599 kb on + strandat 1066.635 kb on - strandat 1066.641 kb on - strandat 1066.711 kb on + strand, within HP15_1047at 1066.719 kb on - strand, within HP15_1047at 1066.856 kb on + strand, within HP15_1047at 1066.886 kb on - strand, within HP15_1047at 1066.892 kb on - strand, within HP15_1047at 1066.897 kb on + strand, within HP15_1047at 1066.924 kb on - strand, within HP15_1047at 1066.937 kb on + strand, within HP15_1047at 1066.955 kb on + strand, within HP15_1047at 1066.980 kb on + strand, within HP15_1047at 1067.127 kb on - strand, within HP15_1047at 1067.188 kb on + strand, within HP15_1047at 1067.234 kb on + strand, within HP15_1047at 1067.241 kb on + strand, within HP15_1047at 1067.242 kb on + strand, within HP15_1047at 1067.278 kb on - strand, within HP15_1047

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,065,240 + +0.0
1,065,240 + +0.8
1,065,240 + +1.4
1,065,240 + +0.1
1,065,248 - +1.7
1,065,248 - +0.0
1,065,248 - +0.1
1,065,309 + HP15_1044 0.14 -0.0
1,065,405 - HP15_1044 0.29 +2.1
1,065,408 + HP15_1044 0.29 -0.0
1,065,627 + HP15_1044 0.64 -0.1
1,065,637 + HP15_1044 0.65 +0.1
1,065,674 + HP15_1044 0.71 -0.5
1,065,690 + HP15_1044 0.74 -0.2
1,065,723 + HP15_1044 0.79 -0.4
1,065,724 - HP15_1044 0.79 -1.0
1,065,749 - HP15_1044 0.83 +0.8
1,065,846 + +0.1
1,066,331 + -0.0
1,066,372 + +1.8
1,066,372 + -0.2
1,066,391 + +1.0
1,066,399 - -1.1
1,066,427 - +0.0
1,066,509 - +1.0
1,066,516 - -1.1
1,066,582 - +0.6
1,066,599 + +0.6
1,066,635 - +0.8
1,066,641 - +0.8
1,066,711 + HP15_1047 0.12 -0.3
1,066,719 - HP15_1047 0.12 +0.0
1,066,856 + HP15_1047 0.17 -2.3
1,066,886 - HP15_1047 0.18 +0.2
1,066,892 - HP15_1047 0.19 +1.4
1,066,897 + HP15_1047 0.19 +0.6
1,066,924 - HP15_1047 0.20 -1.3
1,066,937 + HP15_1047 0.20 +0.6
1,066,955 + HP15_1047 0.21 +0.4
1,066,980 + HP15_1047 0.22 +0.1
1,067,127 - HP15_1047 0.27 -0.7
1,067,188 + HP15_1047 0.30 -0.4
1,067,234 + HP15_1047 0.32 +0.5
1,067,241 + HP15_1047 0.32 +1.1
1,067,242 + HP15_1047 0.32 -0.2
1,067,278 - HP15_1047 0.33 +0.6

Or see this region's nucleotide sequence