Strain Fitness in Marinobacter adhaerens HP15 around HP15_1044

Experiment: Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1043 and HP15_1044 are separated by 56 nucleotidesHP15_1044 and HP15_1045 are separated by 71 nucleotidesHP15_1045 and HP15_1047 are separated by 114 nucleotides HP15_1043: HP15_1043 - conserved hypothetical protein, at 1,064,096 to 1,065,163 _1043 HP15_1044: HP15_1044 - lysine exporter protein (LYSE/YGGA), at 1,065,220 to 1,065,858 _1044 HP15_1045: HP15_1045 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein, at 1,065,930 to 1,066,289 _1045 HP15_1047: HP15_1047 - DNA mismatch repair protein MutS, at 1,066,404 to 1,069,034 _1047 Position (kb) 1065 1066Strain fitness (log2 ratio) -2 -1 0 1 2at 1064.315 kb on - strand, within HP15_1043at 1064.350 kb on - strand, within HP15_1043at 1064.352 kb on + strand, within HP15_1043at 1064.360 kb on - strand, within HP15_1043at 1064.386 kb on + strand, within HP15_1043at 1064.474 kb on - strand, within HP15_1043at 1064.526 kb on + strand, within HP15_1043at 1064.534 kb on - strand, within HP15_1043at 1064.763 kb on + strand, within HP15_1043at 1064.764 kb on - strand, within HP15_1043at 1064.823 kb on + strand, within HP15_1043at 1064.873 kb on + strand, within HP15_1043at 1064.909 kb on + strand, within HP15_1043at 1065.240 kb on + strandat 1065.240 kb on + strandat 1065.240 kb on + strandat 1065.240 kb on + strandat 1065.248 kb on - strandat 1065.248 kb on - strandat 1065.248 kb on - strandat 1065.309 kb on + strand, within HP15_1044at 1065.405 kb on - strand, within HP15_1044at 1065.408 kb on + strand, within HP15_1044at 1065.627 kb on + strand, within HP15_1044at 1065.637 kb on + strand, within HP15_1044at 1065.674 kb on + strand, within HP15_1044at 1065.690 kb on + strand, within HP15_1044at 1065.723 kb on + strand, within HP15_1044at 1065.724 kb on - strand, within HP15_1044at 1065.749 kb on - strand, within HP15_1044at 1065.846 kb on + strandat 1066.331 kb on + strandat 1066.372 kb on + strandat 1066.372 kb on + strandat 1066.391 kb on + strandat 1066.399 kb on - strandat 1066.427 kb on - strandat 1066.509 kb on - strandat 1066.516 kb on - strandat 1066.582 kb on - strandat 1066.599 kb on + strandat 1066.635 kb on - strandat 1066.641 kb on - strandat 1066.711 kb on + strand, within HP15_1047at 1066.719 kb on - strand, within HP15_1047at 1066.856 kb on + strand, within HP15_1047

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH8102 10:1 starting OD to HP15
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1,064,315 - HP15_1043 0.21 -0.4
1,064,350 - HP15_1043 0.24 +0.1
1,064,352 + HP15_1043 0.24 -0.5
1,064,360 - HP15_1043 0.25 -0.7
1,064,386 + HP15_1043 0.27 -1.2
1,064,474 - HP15_1043 0.35 +0.3
1,064,526 + HP15_1043 0.40 -0.7
1,064,534 - HP15_1043 0.41 +1.1
1,064,763 + HP15_1043 0.62 -1.1
1,064,764 - HP15_1043 0.63 -0.2
1,064,823 + HP15_1043 0.68 +0.8
1,064,873 + HP15_1043 0.73 -0.7
1,064,909 + HP15_1043 0.76 +0.5
1,065,240 + +0.0
1,065,240 + +0.8
1,065,240 + +1.4
1,065,240 + +0.1
1,065,248 - +1.7
1,065,248 - +0.0
1,065,248 - +0.1
1,065,309 + HP15_1044 0.14 -0.0
1,065,405 - HP15_1044 0.29 +2.1
1,065,408 + HP15_1044 0.29 -0.0
1,065,627 + HP15_1044 0.64 -0.1
1,065,637 + HP15_1044 0.65 +0.1
1,065,674 + HP15_1044 0.71 -0.5
1,065,690 + HP15_1044 0.74 -0.2
1,065,723 + HP15_1044 0.79 -0.4
1,065,724 - HP15_1044 0.79 -1.0
1,065,749 - HP15_1044 0.83 +0.8
1,065,846 + +0.1
1,066,331 + -0.0
1,066,372 + +1.8
1,066,372 + -0.2
1,066,391 + +1.0
1,066,399 - -1.1
1,066,427 - +0.0
1,066,509 - +1.0
1,066,516 - -1.1
1,066,582 - +0.6
1,066,599 + +0.6
1,066,635 - +0.8
1,066,641 - +0.8
1,066,711 + HP15_1047 0.12 -0.3
1,066,719 - HP15_1047 0.12 +0.0
1,066,856 + HP15_1047 0.17 -2.3

Or see this region's nucleotide sequence