Strain Fitness in Shewanella oneidensis MR-1 around SO1758

Experiment: LB, aerobic, 1G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1756 and SO1757 are separated by 99 nucleotidesSO1757 and SO1758 are separated by 116 nucleotidesSO1758 and SO1759 are separated by 60 nucleotidesSO1759 and SO1760 overlap by 4 nucleotides SO1756: SO1756 - glyoxalase family protein (NCBI ptt file), at 1,838,143 to 1,838,532 SO1756 SO1757: SO1757 - conserved hypothetical protein (NCBI ptt file), at 1,838,632 to 1,839,111 SO1757 SO1758: SO1758 - conserved hypothetical protein (NCBI ptt file), at 1,839,228 to 1,839,920 SO1758 SO1759: SO1759 - conserved hypothetical protein (NCBI ptt file), at 1,839,981 to 1,840,283 SO1759 SO1760: SO1760 - AzlC family protein (NCBI ptt file), at 1,840,280 to 1,840,972 SO1760 Position (kb) 1839 1840Strain fitness (log2 ratio) -2 -1 0 1 2at 1838.309 kb on + strand, within SO1756at 1838.317 kb on - strand, within SO1756at 1838.317 kb on - strand, within SO1756at 1838.317 kb on - strand, within SO1756at 1838.325 kb on + strand, within SO1756at 1838.362 kb on - strand, within SO1756at 1838.541 kb on + strandat 1838.549 kb on - strandat 1838.599 kb on + strandat 1838.609 kb on + strandat 1838.609 kb on + strandat 1838.609 kb on + strandat 1838.669 kb on + strandat 1838.766 kb on + strand, within SO1757at 1838.774 kb on - strand, within SO1757at 1838.825 kb on + strand, within SO1757at 1838.893 kb on - strand, within SO1757at 1838.972 kb on - strand, within SO1757at 1839.020 kb on + strand, within SO1757at 1839.058 kb on - strand, within SO1757at 1839.243 kb on - strandat 1839.248 kb on + strandat 1839.291 kb on + strandat 1839.299 kb on - strand, within SO1758at 1839.423 kb on - strand, within SO1758at 1839.437 kb on - strand, within SO1758at 1839.491 kb on - strand, within SO1758at 1839.654 kb on - strand, within SO1758at 1839.699 kb on + strand, within SO1758at 1839.777 kb on - strand, within SO1758at 1839.777 kb on - strand, within SO1758at 1839.820 kb on - strand, within SO1758at 1839.865 kb on + strandat 1840.016 kb on - strand, within SO1759at 1840.038 kb on - strand, within SO1759at 1840.052 kb on + strand, within SO1759at 1840.144 kb on + strand, within SO1759at 1840.211 kb on + strand, within SO1759at 1840.412 kb on + strand, within SO1760at 1840.422 kb on + strand, within SO1760at 1840.450 kb on + strand, within SO1760at 1840.450 kb on - strand, within SO1760at 1840.500 kb on + strand, within SO1760at 1840.766 kb on - strand, within SO1760at 1840.779 kb on + strand, within SO1760at 1840.789 kb on + strand, within SO1760at 1840.816 kb on - strand, within SO1760at 1840.824 kb on + strand, within SO1760

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, aerobic, 1G configuration
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1,838,309 + SO1756 0.43 +0.8
1,838,317 - SO1756 0.45 -0.6
1,838,317 - SO1756 0.45 -0.2
1,838,317 - SO1756 0.45 +0.1
1,838,325 + SO1756 0.47 -0.1
1,838,362 - SO1756 0.56 -0.1
1,838,541 + +1.0
1,838,549 - -0.7
1,838,599 + -0.9
1,838,609 + -0.5
1,838,609 + -2.2
1,838,609 + +0.2
1,838,669 + +0.2
1,838,766 + SO1757 0.28 +0.5
1,838,774 - SO1757 0.30 +0.1
1,838,825 + SO1757 0.40 -0.6
1,838,893 - SO1757 0.54 -0.0
1,838,972 - SO1757 0.71 -0.3
1,839,020 + SO1757 0.81 +0.1
1,839,058 - SO1757 0.89 +2.0
1,839,243 - +0.7
1,839,248 + +0.1
1,839,291 + +0.2
1,839,299 - SO1758 0.10 -0.7
1,839,423 - SO1758 0.28 -0.9
1,839,437 - SO1758 0.30 -0.8
1,839,491 - SO1758 0.38 -0.7
1,839,654 - SO1758 0.61 +0.3
1,839,699 + SO1758 0.68 -1.2
1,839,777 - SO1758 0.79 +0.5
1,839,777 - SO1758 0.79 -0.8
1,839,820 - SO1758 0.85 -0.2
1,839,865 + -0.2
1,840,016 - SO1759 0.12 -0.9
1,840,038 - SO1759 0.19 -0.3
1,840,052 + SO1759 0.23 -1.0
1,840,144 + SO1759 0.54 +0.7
1,840,211 + SO1759 0.76 +0.3
1,840,412 + SO1760 0.19 -0.3
1,840,422 + SO1760 0.20 +0.2
1,840,450 + SO1760 0.25 -0.4
1,840,450 - SO1760 0.25 +0.6
1,840,500 + SO1760 0.32 -0.6
1,840,766 - SO1760 0.70 -0.6
1,840,779 + SO1760 0.72 +1.0
1,840,789 + SO1760 0.73 +0.2
1,840,816 - SO1760 0.77 +0.0
1,840,824 + SO1760 0.78 +0.0

Or see this region's nucleotide sequence