Experiment: LB, aerobic, 1G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1756 and SO1757 are separated by 99 nucleotides SO1757 and SO1758 are separated by 116 nucleotides SO1758 and SO1759 are separated by 60 nucleotides SO1759 and SO1760 overlap by 4 nucleotides
SO1756: SO1756 - glyoxalase family protein (NCBI ptt file), at 1,838,143 to 1,838,532
SO1756
SO1757: SO1757 - conserved hypothetical protein (NCBI ptt file), at 1,838,632 to 1,839,111
SO1757
SO1758: SO1758 - conserved hypothetical protein (NCBI ptt file), at 1,839,228 to 1,839,920
SO1758
SO1759: SO1759 - conserved hypothetical protein (NCBI ptt file), at 1,839,981 to 1,840,283
SO1759
SO1760: SO1760 - AzlC family protein (NCBI ptt file), at 1,840,280 to 1,840,972
SO1760
Position (kb)
1839
1840 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1838.309 kb on + strand, within SO1756 at 1838.317 kb on - strand, within SO1756 at 1838.317 kb on - strand, within SO1756 at 1838.317 kb on - strand, within SO1756 at 1838.325 kb on + strand, within SO1756 at 1838.362 kb on - strand, within SO1756 at 1838.541 kb on + strand at 1838.549 kb on - strand at 1838.599 kb on + strand at 1838.609 kb on + strand at 1838.609 kb on + strand at 1838.609 kb on + strand at 1838.669 kb on + strand at 1838.766 kb on + strand, within SO1757 at 1838.774 kb on - strand, within SO1757 at 1838.825 kb on + strand, within SO1757 at 1838.893 kb on - strand, within SO1757 at 1838.972 kb on - strand, within SO1757 at 1839.020 kb on + strand, within SO1757 at 1839.058 kb on - strand, within SO1757 at 1839.243 kb on - strand at 1839.248 kb on + strand at 1839.291 kb on + strand at 1839.299 kb on - strand, within SO1758 at 1839.423 kb on - strand, within SO1758 at 1839.437 kb on - strand, within SO1758 at 1839.491 kb on - strand, within SO1758 at 1839.654 kb on - strand, within SO1758 at 1839.699 kb on + strand, within SO1758 at 1839.777 kb on - strand, within SO1758 at 1839.777 kb on - strand, within SO1758 at 1839.820 kb on - strand, within SO1758 at 1839.865 kb on + strand at 1840.016 kb on - strand, within SO1759 at 1840.038 kb on - strand, within SO1759 at 1840.052 kb on + strand, within SO1759 at 1840.144 kb on + strand, within SO1759 at 1840.211 kb on + strand, within SO1759 at 1840.412 kb on + strand, within SO1760 at 1840.422 kb on + strand, within SO1760 at 1840.450 kb on + strand, within SO1760 at 1840.450 kb on - strand, within SO1760 at 1840.500 kb on + strand, within SO1760 at 1840.766 kb on - strand, within SO1760 at 1840.779 kb on + strand, within SO1760 at 1840.789 kb on + strand, within SO1760 at 1840.816 kb on - strand, within SO1760 at 1840.824 kb on + strand, within SO1760
Per-strain Table
Position Strand Gene LocusTag Fraction LB, aerobic, 1G configuration remove 1,838,309 + SO1756 0.43 +0.8 1,838,317 - SO1756 0.45 -0.6 1,838,317 - SO1756 0.45 -0.2 1,838,317 - SO1756 0.45 +0.1 1,838,325 + SO1756 0.47 -0.1 1,838,362 - SO1756 0.56 -0.1 1,838,541 + +1.0 1,838,549 - -0.7 1,838,599 + -0.9 1,838,609 + -0.5 1,838,609 + -2.2 1,838,609 + +0.2 1,838,669 + +0.2 1,838,766 + SO1757 0.28 +0.5 1,838,774 - SO1757 0.30 +0.1 1,838,825 + SO1757 0.40 -0.6 1,838,893 - SO1757 0.54 -0.0 1,838,972 - SO1757 0.71 -0.3 1,839,020 + SO1757 0.81 +0.1 1,839,058 - SO1757 0.89 +2.0 1,839,243 - +0.7 1,839,248 + +0.1 1,839,291 + +0.2 1,839,299 - SO1758 0.10 -0.7 1,839,423 - SO1758 0.28 -0.9 1,839,437 - SO1758 0.30 -0.8 1,839,491 - SO1758 0.38 -0.7 1,839,654 - SO1758 0.61 +0.3 1,839,699 + SO1758 0.68 -1.2 1,839,777 - SO1758 0.79 +0.5 1,839,777 - SO1758 0.79 -0.8 1,839,820 - SO1758 0.85 -0.2 1,839,865 + -0.2 1,840,016 - SO1759 0.12 -0.9 1,840,038 - SO1759 0.19 -0.3 1,840,052 + SO1759 0.23 -1.0 1,840,144 + SO1759 0.54 +0.7 1,840,211 + SO1759 0.76 +0.3 1,840,412 + SO1760 0.19 -0.3 1,840,422 + SO1760 0.20 +0.2 1,840,450 + SO1760 0.25 -0.4 1,840,450 - SO1760 0.25 +0.6 1,840,500 + SO1760 0.32 -0.6 1,840,766 - SO1760 0.70 -0.6 1,840,779 + SO1760 0.72 +1.0 1,840,789 + SO1760 0.73 +0.2 1,840,816 - SO1760 0.77 +0.0 1,840,824 + SO1760 0.78 +0.0
Or see this region's nucleotide sequence