Strain Fitness in Shewanella oneidensis MR-1 around SO0902

Experiment: LB, aerobic, 1G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0900 and nqrA-1 are separated by 453 nucleotidesnqrA-1 and nqrB-1 overlap by 1 nucleotides SO0900: SO0900 - oxidoreductase, aldo/keto reductase family (NCBI ptt file), at 927,436 to 928,476 SO0900 SO0902: nqrA-1 - NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file), at 928,930 to 930,300 nqrA-1 SO0903: nqrB-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file), at 930,300 to 931,532 nqrB-1 Position (kb) 928 929 930 931Strain fitness (log2 ratio) -2 -1 0 1 2at 927.999 kb on - strand, within SO0900at 928.038 kb on - strand, within SO0900at 928.154 kb on - strand, within SO0900at 928.156 kb on + strand, within SO0900at 928.316 kb on + strand, within SO0900at 928.316 kb on + strand, within SO0900at 928.316 kb on + strand, within SO0900at 928.324 kb on - strand, within SO0900at 928.324 kb on - strand, within SO0900at 928.324 kb on - strand, within SO0900at 928.331 kb on + strand, within SO0900at 928.382 kb on - strandat 928.505 kb on - strandat 928.537 kb on + strandat 928.647 kb on + strandat 928.994 kb on + strandat 928.994 kb on + strandat 928.994 kb on + strandat 928.994 kb on + strandat 929.002 kb on - strandat 929.002 kb on - strandat 929.002 kb on - strandat 929.053 kb on + strandat 929.082 kb on + strand, within nqrA-1at 929.216 kb on - strand, within nqrA-1at 929.251 kb on + strand, within nqrA-1at 929.318 kb on - strand, within nqrA-1at 929.324 kb on + strand, within nqrA-1at 929.331 kb on + strand, within nqrA-1at 929.336 kb on + strand, within nqrA-1at 929.339 kb on - strand, within nqrA-1at 929.339 kb on - strand, within nqrA-1at 929.458 kb on + strand, within nqrA-1at 929.466 kb on - strand, within nqrA-1at 929.545 kb on + strand, within nqrA-1at 929.553 kb on - strand, within nqrA-1at 929.553 kb on - strand, within nqrA-1at 929.570 kb on + strand, within nqrA-1at 929.603 kb on - strand, within nqrA-1at 929.616 kb on - strand, within nqrA-1at 929.616 kb on - strand, within nqrA-1at 929.616 kb on - strand, within nqrA-1at 929.649 kb on - strand, within nqrA-1at 929.649 kb on - strand, within nqrA-1at 929.706 kb on + strand, within nqrA-1at 929.714 kb on - strand, within nqrA-1at 929.721 kb on + strand, within nqrA-1at 929.721 kb on + strand, within nqrA-1at 929.721 kb on + strand, within nqrA-1at 929.721 kb on + strand, within nqrA-1at 929.721 kb on + strand, within nqrA-1at 929.721 kb on + strand, within nqrA-1at 929.753 kb on + strand, within nqrA-1at 929.761 kb on - strand, within nqrA-1at 929.761 kb on - strand, within nqrA-1at 929.762 kb on + strand, within nqrA-1at 929.770 kb on - strand, within nqrA-1at 929.803 kb on - strand, within nqrA-1at 929.851 kb on + strand, within nqrA-1at 929.859 kb on - strand, within nqrA-1at 929.861 kb on + strand, within nqrA-1at 929.952 kb on - strand, within nqrA-1at 930.030 kb on + strand, within nqrA-1at 930.055 kb on + strand, within nqrA-1at 930.063 kb on - strand, within nqrA-1at 930.063 kb on - strand, within nqrA-1at 930.073 kb on - strand, within nqrA-1at 930.135 kb on + strand, within nqrA-1at 930.146 kb on + strand, within nqrA-1at 930.232 kb on - strandat 930.259 kb on + strandat 930.272 kb on + strandat 930.280 kb on + strandat 930.280 kb on - strandat 930.280 kb on - strandat 930.280 kb on - strandat 930.280 kb on - strandat 930.303 kb on - strandat 930.405 kb on - strandat 930.558 kb on + strand, within nqrB-1at 930.568 kb on + strand, within nqrB-1at 930.591 kb on - strand, within nqrB-1at 930.593 kb on + strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.629 kb on - strand, within nqrB-1at 930.793 kb on - strand, within nqrB-1at 930.793 kb on - strand, within nqrB-1at 930.863 kb on - strand, within nqrB-1at 930.881 kb on + strand, within nqrB-1at 930.881 kb on - strand, within nqrB-1at 930.881 kb on - strand, within nqrB-1at 931.084 kb on + strand, within nqrB-1at 931.086 kb on - strand, within nqrB-1at 931.112 kb on - strand, within nqrB-1at 931.175 kb on - strand, within nqrB-1at 931.180 kb on - strand, within nqrB-1

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, aerobic, 1G configuration
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927,999 - SO0900 0.54 -0.7
928,038 - SO0900 0.58 +0.0
928,154 - SO0900 0.69 +0.2
928,156 + SO0900 0.69 +0.0
928,316 + SO0900 0.85 +0.3
928,316 + SO0900 0.85 +0.1
928,316 + SO0900 0.85 +0.3
928,324 - SO0900 0.85 -0.7
928,324 - SO0900 0.85 +0.3
928,324 - SO0900 0.85 -0.1
928,331 + SO0900 0.86 -0.4
928,382 - +0.4
928,505 - +1.0
928,537 + -0.2
928,647 + -0.0
928,994 + +0.0
928,994 + -0.2
928,994 + +1.0
928,994 + -1.0
929,002 - -2.0
929,002 - -0.4
929,002 - -0.6
929,053 + +0.6
929,082 + nqrA-1 SO0902 0.11 -0.0
929,216 - nqrA-1 SO0902 0.21 +0.6
929,251 + nqrA-1 SO0902 0.23 +0.3
929,318 - nqrA-1 SO0902 0.28 +0.5
929,324 + nqrA-1 SO0902 0.29 +0.3
929,331 + nqrA-1 SO0902 0.29 -0.5
929,336 + nqrA-1 SO0902 0.30 +1.4
929,339 - nqrA-1 SO0902 0.30 -0.9
929,339 - nqrA-1 SO0902 0.30 -1.1
929,458 + nqrA-1 SO0902 0.39 -0.2
929,466 - nqrA-1 SO0902 0.39 +0.4
929,545 + nqrA-1 SO0902 0.45 +0.0
929,553 - nqrA-1 SO0902 0.45 +0.6
929,553 - nqrA-1 SO0902 0.45 -1.8
929,570 + nqrA-1 SO0902 0.47 +0.2
929,603 - nqrA-1 SO0902 0.49 -0.4
929,616 - nqrA-1 SO0902 0.50 -1.3
929,616 - nqrA-1 SO0902 0.50 +0.0
929,616 - nqrA-1 SO0902 0.50 -0.5
929,649 - nqrA-1 SO0902 0.52 -0.0
929,649 - nqrA-1 SO0902 0.52 +0.1
929,706 + nqrA-1 SO0902 0.57 +1.0
929,714 - nqrA-1 SO0902 0.57 +0.0
929,721 + nqrA-1 SO0902 0.58 +0.0
929,721 + nqrA-1 SO0902 0.58 -0.1
929,721 + nqrA-1 SO0902 0.58 +0.2
929,721 + nqrA-1 SO0902 0.58 -0.4
929,721 + nqrA-1 SO0902 0.58 +0.2
929,721 + nqrA-1 SO0902 0.58 -0.3
929,753 + nqrA-1 SO0902 0.60 +1.0
929,761 - nqrA-1 SO0902 0.61 -0.8
929,761 - nqrA-1 SO0902 0.61 +0.2
929,762 + nqrA-1 SO0902 0.61 -0.7
929,770 - nqrA-1 SO0902 0.61 +0.3
929,803 - nqrA-1 SO0902 0.64 -0.4
929,851 + nqrA-1 SO0902 0.67 +0.1
929,859 - nqrA-1 SO0902 0.68 -0.2
929,861 + nqrA-1 SO0902 0.68 -0.1
929,952 - nqrA-1 SO0902 0.75 -0.1
930,030 + nqrA-1 SO0902 0.80 -1.0
930,055 + nqrA-1 SO0902 0.82 +0.3
930,063 - nqrA-1 SO0902 0.83 +0.3
930,063 - nqrA-1 SO0902 0.83 +0.0
930,073 - nqrA-1 SO0902 0.83 +0.6
930,135 + nqrA-1 SO0902 0.88 +0.6
930,146 + nqrA-1 SO0902 0.89 +0.8
930,232 - -0.1
930,259 + +0.8
930,272 + +0.3
930,280 + +1.0
930,280 - +0.3
930,280 - -0.1
930,280 - +0.2
930,280 - +0.3
930,303 - +0.0
930,405 - -2.3
930,558 + nqrB-1 SO0903 0.21 -0.6
930,568 + nqrB-1 SO0903 0.22 +0.6
930,591 - nqrB-1 SO0903 0.24 -0.7
930,593 + nqrB-1 SO0903 0.24 -1.0
930,601 - nqrB-1 SO0903 0.24 -0.3
930,601 - nqrB-1 SO0903 0.24 -0.4
930,601 - nqrB-1 SO0903 0.24 -1.3
930,601 - nqrB-1 SO0903 0.24 +1.0
930,629 - nqrB-1 SO0903 0.27 -1.0
930,793 - nqrB-1 SO0903 0.40 -0.2
930,793 - nqrB-1 SO0903 0.40 +0.4
930,863 - nqrB-1 SO0903 0.46 +0.2
930,881 + nqrB-1 SO0903 0.47 +1.8
930,881 - nqrB-1 SO0903 0.47 +0.2
930,881 - nqrB-1 SO0903 0.47 +0.3
931,084 + nqrB-1 SO0903 0.64 +0.5
931,086 - nqrB-1 SO0903 0.64 +0.3
931,112 - nqrB-1 SO0903 0.66 +0.2
931,175 - nqrB-1 SO0903 0.71 -0.5
931,180 - nqrB-1 SO0903 0.71 +0.3

Or see this region's nucleotide sequence