Strain Fitness in Shewanella oneidensis MR-1 around SO0681

Experiment: LB, aerobic, 1G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0680 and SO0681 overlap by 4 nucleotidesSO0681 and SO0682 are separated by 12 nucleotides SO0680: SO0680 - hypothetical protein (NCBI ptt file), at 696,621 to 700,547 SO0680 SO0681: SO0681 - hypothetical protein (NCBI ptt file), at 700,544 to 700,909 SO0681 SO0682: SO0682 - hypothetical protein (NCBI ptt file), at 700,922 to 703,417 SO0682 Position (kb) 700 701Strain fitness (log2 ratio) -2 -1 0 1 2at 699.593 kb on + strand, within SO0680at 699.599 kb on - strand, within SO0680at 699.623 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.714 kb on + strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.747 kb on + strand, within SO0680at 699.747 kb on + strand, within SO0680at 699.826 kb on - strand, within SO0680at 699.841 kb on + strand, within SO0680at 699.841 kb on + strand, within SO0680at 699.924 kb on - strand, within SO0680at 700.016 kb on - strand, within SO0680at 700.065 kb on - strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.096 kb on + strand, within SO0680at 700.104 kb on + strand, within SO0680at 700.163 kb on + strandat 700.182 kb on - strandat 700.195 kb on - strandat 700.195 kb on - strandat 700.195 kb on - strandat 700.370 kb on + strandat 700.378 kb on - strandat 700.378 kb on - strandat 700.389 kb on - strandat 700.451 kb on + strandat 700.503 kb on - strandat 700.527 kb on - strandat 700.527 kb on - strandat 700.529 kb on + strandat 700.529 kb on + strandat 700.529 kb on + strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.551 kb on + strandat 700.560 kb on - strandat 700.607 kb on + strand, within SO0681at 700.607 kb on + strand, within SO0681at 700.615 kb on - strand, within SO0681at 700.649 kb on - strand, within SO0681at 700.696 kb on - strand, within SO0681at 700.720 kb on + strand, within SO0681at 700.799 kb on - strand, within SO0681at 700.801 kb on + strand, within SO0681at 700.862 kb on - strand, within SO0681at 700.904 kb on + strandat 700.913 kb on - strandat 700.979 kb on - strandat 700.979 kb on - strandat 701.017 kb on + strandat 701.017 kb on + strandat 701.030 kb on - strandat 701.034 kb on - strandat 701.142 kb on + strandat 701.142 kb on + strandat 701.150 kb on - strandat 701.150 kb on - strandat 701.161 kb on + strandat 701.285 kb on - strand, within SO0682at 701.355 kb on + strand, within SO0682at 701.364 kb on + strand, within SO0682at 701.364 kb on + strand, within SO0682at 701.372 kb on - strand, within SO0682at 701.405 kb on - strand, within SO0682at 701.429 kb on - strand, within SO0682at 701.557 kb on + strand, within SO0682at 701.595 kb on + strand, within SO0682at 701.595 kb on + strand, within SO0682at 701.600 kb on + strand, within SO0682at 701.627 kb on - strand, within SO0682at 701.707 kb on - strand, within SO0682at 701.724 kb on + strand, within SO0682at 701.741 kb on - strand, within SO0682at 701.764 kb on - strand, within SO0682at 701.790 kb on + strand, within SO0682at 701.798 kb on - strand, within SO0682at 701.839 kb on + strand, within SO0682at 701.847 kb on + strand, within SO0682

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, aerobic, 1G configuration
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699,593 + SO0680 0.76 -1.0
699,599 - SO0680 0.76 +0.7
699,623 + SO0680 0.76 -0.6
699,713 + SO0680 0.79 +0.3
699,713 + SO0680 0.79 +1.0
699,713 + SO0680 0.79 +0.1
699,713 + SO0680 0.79 +1.3
699,713 + SO0680 0.79 -0.1
699,713 + SO0680 0.79 -0.4
699,714 + SO0680 0.79 -1.8
699,721 - SO0680 0.79 +0.4
699,721 - SO0680 0.79 +0.4
699,721 - SO0680 0.79 -0.1
699,721 - SO0680 0.79 -0.8
699,721 - SO0680 0.79 +0.0
699,747 + SO0680 0.80 -0.2
699,747 + SO0680 0.80 +0.3
699,826 - SO0680 0.82 -0.1
699,841 + SO0680 0.82 +2.4
699,841 + SO0680 0.82 -0.0
699,924 - SO0680 0.84 -0.2
700,016 - SO0680 0.86 +0.6
700,065 - SO0680 0.88 -0.6
700,086 + SO0680 0.88 +0.8
700,086 + SO0680 0.88 -1.4
700,086 + SO0680 0.88 +0.5
700,094 - SO0680 0.88 +1.6
700,094 - SO0680 0.88 +0.1
700,094 - SO0680 0.88 +1.0
700,096 + SO0680 0.88 -0.8
700,104 + SO0680 0.89 -1.0
700,163 + +1.0
700,182 - +0.3
700,195 - -0.2
700,195 - -0.6
700,195 - +2.2
700,370 + -0.3
700,378 - -0.2
700,378 - -2.7
700,389 - -0.4
700,451 + -0.5
700,503 - -0.9
700,527 - -1.0
700,527 - -0.8
700,529 + -0.4
700,529 + +0.1
700,529 + +0.6
700,537 - -0.1
700,537 - +1.8
700,537 - -0.7
700,537 - -0.3
700,537 - +0.3
700,537 - +0.5
700,551 + +0.1
700,560 - +0.0
700,607 + SO0681 0.17 -0.8
700,607 + SO0681 0.17 +0.3
700,615 - SO0681 0.19 -0.7
700,649 - SO0681 0.29 +0.4
700,696 - SO0681 0.42 -0.9
700,720 + SO0681 0.48 -1.0
700,799 - SO0681 0.70 -0.0
700,801 + SO0681 0.70 -0.5
700,862 - SO0681 0.87 -0.9
700,904 + +0.3
700,913 - -0.7
700,979 - -1.2
700,979 - -0.1
701,017 + -1.0
701,017 + -0.3
701,030 - +0.1
701,034 - +0.6
701,142 + -0.0
701,142 + +0.6
701,150 - +0.4
701,150 - +1.6
701,161 + -0.9
701,285 - SO0682 0.15 -1.4
701,355 + SO0682 0.17 +1.0
701,364 + SO0682 0.18 -0.0
701,364 + SO0682 0.18 -0.6
701,372 - SO0682 0.18 +0.3
701,405 - SO0682 0.19 +0.3
701,429 - SO0682 0.20 +0.3
701,557 + SO0682 0.25 +0.8
701,595 + SO0682 0.27 +0.1
701,595 + SO0682 0.27 -1.1
701,600 + SO0682 0.27 -0.1
701,627 - SO0682 0.28 +0.1
701,707 - SO0682 0.31 +0.4
701,724 + SO0682 0.32 -0.3
701,741 - SO0682 0.33 -0.3
701,764 - SO0682 0.34 -0.7
701,790 + SO0682 0.35 +0.2
701,798 - SO0682 0.35 -0.2
701,839 + SO0682 0.37 +0.2
701,847 + SO0682 0.37 +0.0

Or see this region's nucleotide sequence