Experiment: LB, aerobic, 1G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0118 and SO0119 are separated by 260 nucleotides SO0119 and SO0120 are separated by 17 nucleotides SO0120 and SO0121 are separated by 298 nucleotides
SO0118: SO0118 - hypothetical protein (NCBI ptt file), at 128,107 to 128,979
SO0118
SO0119: SO0119 - conserved hypothetical protein (NCBI ptt file), at 129,240 to 129,632
SO0119
SO0120: SO0120 - hypothetical protein (NCBI ptt file), at 129,650 to 130,228
SO0120
SO0121: SO0121 - hypothetical Small-conductance mechanosensitive channel (NCBI ptt file), at 130,527 to 131,705
SO0121
Position (kb) 129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 128.289 kb on - strand, within SO0118 at 128.300 kb on - strand, within SO0118 at 128.331 kb on - strand, within SO0118 at 128.432 kb on - strand, within SO0118 at 128.470 kb on + strand, within SO0118 at 128.478 kb on - strand, within SO0118 at 128.488 kb on + strand, within SO0118 at 128.488 kb on + strand, within SO0118 at 128.529 kb on - strand, within SO0118 at 128.529 kb on - strand, within SO0118 at 128.529 kb on - strand, within SO0118 at 128.560 kb on - strand, within SO0118 at 128.595 kb on - strand, within SO0118 at 128.595 kb on - strand, within SO0118 at 128.771 kb on - strand, within SO0118 at 128.771 kb on - strand, within SO0118 at 128.795 kb on + strand, within SO0118 at 128.954 kb on + strand at 128.955 kb on + strand at 129.002 kb on + strand at 129.002 kb on + strand at 129.055 kb on + strand at 129.062 kb on + strand at 129.070 kb on - strand at 129.070 kb on - strand at 129.070 kb on - strand at 129.117 kb on - strand at 129.144 kb on + strand at 129.144 kb on + strand at 129.208 kb on + strand at 129.296 kb on + strand, within SO0119 at 129.309 kb on - strand, within SO0119 at 129.365 kb on - strand, within SO0119 at 129.368 kb on + strand, within SO0119 at 129.376 kb on - strand, within SO0119 at 129.397 kb on - strand, within SO0119 at 129.426 kb on - strand, within SO0119 at 129.442 kb on - strand, within SO0119 at 129.476 kb on + strand, within SO0119 at 129.539 kb on + strand, within SO0119 at 129.587 kb on + strand, within SO0119 at 129.780 kb on + strand, within SO0120 at 129.842 kb on - strand, within SO0120 at 129.877 kb on - strand, within SO0120 at 129.895 kb on - strand, within SO0120 at 129.907 kb on + strand, within SO0120 at 130.054 kb on - strand, within SO0120 at 130.095 kb on + strand, within SO0120 at 130.103 kb on - strand, within SO0120 at 130.145 kb on + strand, within SO0120 at 130.151 kb on - strand, within SO0120 at 130.180 kb on - strand at 130.387 kb on + strand at 130.530 kb on - strand at 130.620 kb on + strand at 130.623 kb on - strand at 130.624 kb on - strand at 130.624 kb on - strand at 130.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, aerobic, 1G configuration remove 128,289 - SO0118 0.21 +0.0 128,300 - SO0118 0.22 +0.6 128,331 - SO0118 0.26 +1.5 128,432 - SO0118 0.37 -0.6 128,470 + SO0118 0.42 +0.1 128,478 - SO0118 0.42 -0.2 128,488 + SO0118 0.44 +0.1 128,488 + SO0118 0.44 +0.4 128,529 - SO0118 0.48 +0.5 128,529 - SO0118 0.48 -0.1 128,529 - SO0118 0.48 +0.1 128,560 - SO0118 0.52 +0.4 128,595 - SO0118 0.56 +0.4 128,595 - SO0118 0.56 +0.7 128,771 - SO0118 0.76 +0.1 128,771 - SO0118 0.76 -1.3 128,795 + SO0118 0.79 -0.8 128,954 + -0.5 128,955 + -0.3 129,002 + +1.2 129,002 + -0.4 129,055 + +0.8 129,062 + +0.0 129,070 - -0.8 129,070 - +0.1 129,070 - -0.4 129,117 - -0.3 129,144 + -0.2 129,144 + -0.2 129,208 + +1.1 129,296 + SO0119 0.14 -0.3 129,309 - SO0119 0.18 +0.7 129,365 - SO0119 0.32 -0.6 129,368 + SO0119 0.33 -2.0 129,376 - SO0119 0.35 -0.4 129,397 - SO0119 0.40 -0.9 129,426 - SO0119 0.47 +0.3 129,442 - SO0119 0.51 -0.3 129,476 + SO0119 0.60 -0.4 129,539 + SO0119 0.76 -1.0 129,587 + SO0119 0.88 -0.6 129,780 + SO0120 0.22 -0.8 129,842 - SO0120 0.33 +0.6 129,877 - SO0120 0.39 +0.1 129,895 - SO0120 0.42 +0.3 129,907 + SO0120 0.44 +0.3 130,054 - SO0120 0.70 +0.5 130,095 + SO0120 0.77 +0.2 130,103 - SO0120 0.78 -0.8 130,145 + SO0120 0.85 -0.2 130,151 - SO0120 0.87 -0.2 130,180 - -0.1 130,387 + +0.3 130,530 - -0.6 130,620 + -0.9 130,623 - +0.0 130,624 - +0.4 130,624 - -0.6 130,626 - +1.4
Or see this region's nucleotide sequence