Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17550 and RALBFv3_RS17555 are separated by 286 nucleotides RALBFv3_RS17555 and RALBFv3_RS17560 are separated by 106 nucleotides
RALBFv3_RS17550: RALBFv3_RS17550 - mercuric reductase, at 432,822 to 434,201
_RS17550
RALBFv3_RS17555: RALBFv3_RS17555 - hypothetical protein, at 434,488 to 434,961
_RS17555
RALBFv3_RS17560: RALBFv3_RS17560 - type III effector protein skwp2, at 435,068 to 442,627
_RS17560
Position (kb) 434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 433.636 kb on + strand, within RALBFv3_RS17550 at 433.637 kb on - strand, within RALBFv3_RS17550 at 433.663 kb on + strand, within RALBFv3_RS17550 at 433.663 kb on + strand, within RALBFv3_RS17550 at 433.663 kb on + strand, within RALBFv3_RS17550 at 433.663 kb on + strand, within RALBFv3_RS17550 at 433.663 kb on + strand, within RALBFv3_RS17550 at 433.663 kb on + strand, within RALBFv3_RS17550 at 433.664 kb on - strand, within RALBFv3_RS17550 at 433.664 kb on - strand, within RALBFv3_RS17550 at 433.733 kb on - strand, within RALBFv3_RS17550 at 433.733 kb on - strand, within RALBFv3_RS17550 at 433.868 kb on - strand, within RALBFv3_RS17550 at 434.029 kb on + strand, within RALBFv3_RS17550 at 434.030 kb on - strand, within RALBFv3_RS17550 at 434.288 kb on - strand at 434.292 kb on + strand at 434.293 kb on - strand at 434.293 kb on - strand at 434.429 kb on - strand at 434.435 kb on - strand at 434.711 kb on - strand, within RALBFv3_RS17555 at 434.728 kb on - strand, within RALBFv3_RS17555 at 434.785 kb on + strand, within RALBFv3_RS17555 at 434.786 kb on - strand, within RALBFv3_RS17555 at 434.786 kb on - strand, within RALBFv3_RS17555 at 434.786 kb on - strand, within RALBFv3_RS17555 at 434.839 kb on + strand, within RALBFv3_RS17555 at 434.839 kb on + strand, within RALBFv3_RS17555 at 434.842 kb on + strand, within RALBFv3_RS17555 at 434.854 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.858 kb on - strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.944 kb on + strand at 434.944 kb on + strand at 434.945 kb on - strand at 435.280 kb on - strand at 435.280 kb on - strand at 435.280 kb on - strand at 435.280 kb on - strand at 435.387 kb on + strand at 435.388 kb on - strand at 435.414 kb on + strand at 435.414 kb on + strand at 435.415 kb on - strand at 435.415 kb on - strand at 435.415 kb on - strand at 435.492 kb on + strand at 435.492 kb on + strand at 435.493 kb on - strand at 435.493 kb on - strand at 435.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 433,636 + RALBFv3_RS17550 0.59 -1.3 433,637 - RALBFv3_RS17550 0.59 -0.1 433,663 + RALBFv3_RS17550 0.61 -0.7 433,663 + RALBFv3_RS17550 0.61 +1.4 433,663 + RALBFv3_RS17550 0.61 -0.6 433,663 + RALBFv3_RS17550 0.61 +1.0 433,663 + RALBFv3_RS17550 0.61 -0.0 433,663 + RALBFv3_RS17550 0.61 -0.4 433,664 - RALBFv3_RS17550 0.61 +0.1 433,664 - RALBFv3_RS17550 0.61 +1.0 433,733 - RALBFv3_RS17550 0.66 -0.9 433,733 - RALBFv3_RS17550 0.66 -0.7 433,868 - RALBFv3_RS17550 0.76 -0.0 434,029 + RALBFv3_RS17550 0.87 +0.2 434,030 - RALBFv3_RS17550 0.88 +1.0 434,288 - -0.5 434,292 + +0.8 434,293 - -0.2 434,293 - +0.4 434,429 - -1.8 434,435 - -0.1 434,711 - RALBFv3_RS17555 0.47 +0.2 434,728 - RALBFv3_RS17555 0.51 -2.8 434,785 + RALBFv3_RS17555 0.63 +0.0 434,786 - RALBFv3_RS17555 0.63 -0.0 434,786 - RALBFv3_RS17555 0.63 -0.4 434,786 - RALBFv3_RS17555 0.63 +1.0 434,839 + RALBFv3_RS17555 0.74 -1.8 434,839 + RALBFv3_RS17555 0.74 +0.4 434,842 + RALBFv3_RS17555 0.75 -2.1 434,854 + RALBFv3_RS17555 0.77 -1.1 434,857 + RALBFv3_RS17555 0.78 -0.0 434,857 + RALBFv3_RS17555 0.78 +0.7 434,857 + RALBFv3_RS17555 0.78 +1.0 434,857 + RALBFv3_RS17555 0.78 -1.0 434,857 + RALBFv3_RS17555 0.78 -1.6 434,858 - RALBFv3_RS17555 0.78 +0.1 434,899 + RALBFv3_RS17555 0.87 +0.0 434,899 + RALBFv3_RS17555 0.87 +0.3 434,899 + RALBFv3_RS17555 0.87 +0.4 434,899 + RALBFv3_RS17555 0.87 +3.5 434,899 + RALBFv3_RS17555 0.87 -1.2 434,900 - RALBFv3_RS17555 0.87 -1.0 434,900 - RALBFv3_RS17555 0.87 +0.3 434,900 - RALBFv3_RS17555 0.87 +1.0 434,900 - RALBFv3_RS17555 0.87 -1.1 434,900 - RALBFv3_RS17555 0.87 -0.8 434,944 + -0.3 434,944 + -0.4 434,945 - +0.5 435,280 - +1.0 435,280 - -0.4 435,280 - -1.0 435,280 - -0.5 435,387 + -0.0 435,388 - +0.2 435,414 + +1.5 435,414 + -1.9 435,415 - +1.0 435,415 - -2.6 435,415 - -1.5 435,492 + -0.6 435,492 + -1.6 435,493 - +0.8 435,493 - -0.7 435,493 - -0.6
Or see this region's nucleotide sequence