Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4953

Experiment: KB with Anisodamine Hydrobromide () 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4952 and Psyr_4953 are separated by 69 nucleotidesPsyr_4953 and Psyr_4954 are separated by 14 nucleotides Psyr_4952: Psyr_4952 - hypothetical protein, at 5,870,498 to 5,871,247 _4952 Psyr_4953: Psyr_4953 - Uncharacterized conserved protein UCP028301, at 5,871,317 to 5,871,850 _4953 Psyr_4954: Psyr_4954 - Protein of unknown function DUF877, at 5,871,865 to 5,873,367 _4954 Position (kb) 5871 5872Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5870.332 kb on + strandat 5870.332 kb on + strandat 5870.332 kb on + strandat 5870.332 kb on + strandat 5870.333 kb on - strandat 5870.333 kb on - strandat 5870.333 kb on - strandat 5870.333 kb on - strandat 5870.333 kb on - strandat 5870.333 kb on - strandat 5870.333 kb on - strandat 5870.335 kb on - strandat 5870.493 kb on + strandat 5870.493 kb on + strandat 5870.493 kb on + strandat 5870.493 kb on + strandat 5870.516 kb on - strandat 5870.517 kb on + strandat 5870.517 kb on + strandat 5870.517 kb on + strandat 5870.517 kb on + strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.518 kb on - strandat 5870.554 kb on + strandat 5870.588 kb on + strand, within Psyr_4952at 5870.588 kb on + strand, within Psyr_4952at 5870.588 kb on + strand, within Psyr_4952at 5870.589 kb on - strand, within Psyr_4952at 5870.589 kb on - strand, within Psyr_4952at 5870.613 kb on + strand, within Psyr_4952at 5870.640 kb on - strand, within Psyr_4952at 5870.640 kb on - strand, within Psyr_4952at 5870.708 kb on + strand, within Psyr_4952at 5870.708 kb on + strand, within Psyr_4952at 5870.709 kb on - strand, within Psyr_4952at 5870.807 kb on + strand, within Psyr_4952at 5870.807 kb on + strand, within Psyr_4952at 5870.808 kb on - strand, within Psyr_4952at 5870.808 kb on - strand, within Psyr_4952at 5870.951 kb on + strand, within Psyr_4952at 5870.951 kb on + strand, within Psyr_4952at 5870.952 kb on - strand, within Psyr_4952at 5870.952 kb on - strand, within Psyr_4952at 5870.952 kb on - strand, within Psyr_4952at 5870.952 kb on - strand, within Psyr_4952at 5870.952 kb on - strand, within Psyr_4952at 5870.952 kb on - strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.955 kb on + strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.956 kb on - strand, within Psyr_4952at 5870.963 kb on + strand, within Psyr_4952at 5870.963 kb on + strand, within Psyr_4952at 5870.963 kb on + strand, within Psyr_4952at 5870.964 kb on - strand, within Psyr_4952at 5870.964 kb on - strand, within Psyr_4952at 5870.964 kb on - strand, within Psyr_4952at 5870.964 kb on - strand, within Psyr_4952at 5870.964 kb on - strand, within Psyr_4952at 5870.978 kb on + strand, within Psyr_4952at 5870.978 kb on + strand, within Psyr_4952at 5870.979 kb on - strand, within Psyr_4952at 5870.979 kb on - strand, within Psyr_4952at 5870.979 kb on - strand, within Psyr_4952at 5870.979 kb on - strand, within Psyr_4952at 5870.979 kb on - strand, within Psyr_4952at 5871.155 kb on - strand, within Psyr_4952at 5871.245 kb on + strandat 5871.335 kb on - strandat 5871.335 kb on - strandat 5871.376 kb on + strand, within Psyr_4953at 5871.383 kb on + strand, within Psyr_4953at 5871.383 kb on + strand, within Psyr_4953at 5871.384 kb on - strand, within Psyr_4953at 5871.384 kb on - strand, within Psyr_4953at 5871.384 kb on - strand, within Psyr_4953at 5871.384 kb on - strand, within Psyr_4953at 5871.384 kb on - strand, within Psyr_4953at 5871.384 kb on - strand, within Psyr_4953at 5871.436 kb on - strand, within Psyr_4953at 5871.436 kb on - strand, within Psyr_4953at 5871.436 kb on - strand, within Psyr_4953at 5871.848 kb on + strandat 5871.848 kb on + strandat 5871.873 kb on + strandat 5872.034 kb on + strand, within Psyr_4954at 5872.034 kb on + strand, within Psyr_4954at 5872.035 kb on - strand, within Psyr_4954at 5872.035 kb on - strand, within Psyr_4954at 5872.035 kb on - strand, within Psyr_4954at 5872.187 kb on - strand, within Psyr_4954at 5872.187 kb on - strand, within Psyr_4954at 5872.315 kb on + strand, within Psyr_4954at 5872.315 kb on + strand, within Psyr_4954at 5872.316 kb on - strand, within Psyr_4954at 5872.316 kb on - strand, within Psyr_4954at 5872.328 kb on - strand, within Psyr_4954at 5872.373 kb on - strand, within Psyr_4954at 5872.373 kb on - strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.402 kb on + strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.403 kb on - strand, within Psyr_4954at 5872.546 kb on + strand, within Psyr_4954at 5872.547 kb on - strand, within Psyr_4954at 5872.702 kb on + strand, within Psyr_4954at 5872.702 kb on + strand, within Psyr_4954at 5872.702 kb on + strand, within Psyr_4954at 5872.703 kb on - strand, within Psyr_4954at 5872.703 kb on - strand, within Psyr_4954at 5872.703 kb on - strand, within Psyr_4954at 5872.724 kb on - strand, within Psyr_4954at 5872.827 kb on + strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954at 5872.828 kb on - strand, within Psyr_4954

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anisodamine Hydrobromide () 10 mM
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5,870,332 + +0.7
5,870,332 + +0.6
5,870,332 + +0.7
5,870,332 + -0.9
5,870,333 - +0.1
5,870,333 - -1.3
5,870,333 - +0.9
5,870,333 - -0.5
5,870,333 - -0.7
5,870,333 - +0.7
5,870,333 - -0.7
5,870,335 - -2.3
5,870,493 + +0.6
5,870,493 + -0.4
5,870,493 + -1.3
5,870,493 + +0.7
5,870,516 - +1.7
5,870,517 + -0.7
5,870,517 + -0.9
5,870,517 + -1.7
5,870,517 + -0.4
5,870,518 - +0.9
5,870,518 - +0.3
5,870,518 - -2.5
5,870,518 - -0.0
5,870,518 - +0.2
5,870,518 - -0.3
5,870,518 - -0.4
5,870,518 - -0.0
5,870,518 - -0.0
5,870,518 - -0.3
5,870,554 + +0.6
5,870,588 + Psyr_4952 0.12 +1.5
5,870,588 + Psyr_4952 0.12 +0.1
5,870,588 + Psyr_4952 0.12 -0.5
5,870,589 - Psyr_4952 0.12 +0.2
5,870,589 - Psyr_4952 0.12 -1.8
5,870,613 + Psyr_4952 0.15 -0.2
5,870,640 - Psyr_4952 0.19 +0.4
5,870,640 - Psyr_4952 0.19 -0.7
5,870,708 + Psyr_4952 0.28 -0.3
5,870,708 + Psyr_4952 0.28 -0.5
5,870,709 - Psyr_4952 0.28 -1.2
5,870,807 + Psyr_4952 0.41 -0.2
5,870,807 + Psyr_4952 0.41 +0.7
5,870,808 - Psyr_4952 0.41 -0.1
5,870,808 - Psyr_4952 0.41 +0.4
5,870,951 + Psyr_4952 0.60 +1.1
5,870,951 + Psyr_4952 0.60 -0.2
5,870,952 - Psyr_4952 0.61 -0.0
5,870,952 - Psyr_4952 0.61 -0.6
5,870,952 - Psyr_4952 0.61 -0.9
5,870,952 - Psyr_4952 0.61 +1.1
5,870,952 - Psyr_4952 0.61 +0.9
5,870,952 - Psyr_4952 0.61 +1.0
5,870,955 + Psyr_4952 0.61 +0.2
5,870,955 + Psyr_4952 0.61 -0.2
5,870,955 + Psyr_4952 0.61 -0.9
5,870,955 + Psyr_4952 0.61 -2.2
5,870,955 + Psyr_4952 0.61 +0.3
5,870,955 + Psyr_4952 0.61 +0.0
5,870,955 + Psyr_4952 0.61 +0.2
5,870,956 - Psyr_4952 0.61 +0.3
5,870,956 - Psyr_4952 0.61 -0.3
5,870,956 - Psyr_4952 0.61 +3.7
5,870,956 - Psyr_4952 0.61 +0.1
5,870,956 - Psyr_4952 0.61 -1.6
5,870,956 - Psyr_4952 0.61 -0.0
5,870,956 - Psyr_4952 0.61 +0.6
5,870,956 - Psyr_4952 0.61 +0.3
5,870,956 - Psyr_4952 0.61 +0.8
5,870,963 + Psyr_4952 0.62 -1.1
5,870,963 + Psyr_4952 0.62 -0.0
5,870,963 + Psyr_4952 0.62 -1.5
5,870,964 - Psyr_4952 0.62 +0.3
5,870,964 - Psyr_4952 0.62 +0.7
5,870,964 - Psyr_4952 0.62 +0.4
5,870,964 - Psyr_4952 0.62 -0.9
5,870,964 - Psyr_4952 0.62 +0.3
5,870,978 + Psyr_4952 0.64 -1.9
5,870,978 + Psyr_4952 0.64 -0.0
5,870,979 - Psyr_4952 0.64 -0.4
5,870,979 - Psyr_4952 0.64 +0.7
5,870,979 - Psyr_4952 0.64 +0.2
5,870,979 - Psyr_4952 0.64 +0.1
5,870,979 - Psyr_4952 0.64 +0.2
5,871,155 - Psyr_4952 0.88 -1.6
5,871,245 + +0.4
5,871,335 - -0.9
5,871,335 - -1.3
5,871,376 + Psyr_4953 0.11 +0.4
5,871,383 + Psyr_4953 0.12 -0.3
5,871,383 + Psyr_4953 0.12 -2.6
5,871,384 - Psyr_4953 0.13 +1.7
5,871,384 - Psyr_4953 0.13 -3.1
5,871,384 - Psyr_4953 0.13 -1.9
5,871,384 - Psyr_4953 0.13 -1.2
5,871,384 - Psyr_4953 0.13 -1.2
5,871,384 - Psyr_4953 0.13 +0.9
5,871,436 - Psyr_4953 0.22 -0.7
5,871,436 - Psyr_4953 0.22 -1.8
5,871,436 - Psyr_4953 0.22 -1.2
5,871,848 + +0.2
5,871,848 + +0.3
5,871,873 + +0.1
5,872,034 + Psyr_4954 0.11 +0.9
5,872,034 + Psyr_4954 0.11 +0.9
5,872,035 - Psyr_4954 0.11 -0.7
5,872,035 - Psyr_4954 0.11 -0.3
5,872,035 - Psyr_4954 0.11 +0.5
5,872,187 - Psyr_4954 0.21 -0.2
5,872,187 - Psyr_4954 0.21 -0.2
5,872,315 + Psyr_4954 0.30 +0.7
5,872,315 + Psyr_4954 0.30 +0.8
5,872,316 - Psyr_4954 0.30 +0.2
5,872,316 - Psyr_4954 0.30 -0.8
5,872,328 - Psyr_4954 0.31 -0.0
5,872,373 - Psyr_4954 0.34 -1.3
5,872,373 - Psyr_4954 0.34 -0.8
5,872,402 + Psyr_4954 0.36 +1.1
5,872,402 + Psyr_4954 0.36 +0.8
5,872,402 + Psyr_4954 0.36 -0.0
5,872,402 + Psyr_4954 0.36 +2.0
5,872,402 + Psyr_4954 0.36 +0.4
5,872,402 + Psyr_4954 0.36 +0.0
5,872,402 + Psyr_4954 0.36 -1.0
5,872,402 + Psyr_4954 0.36 -0.2
5,872,403 - Psyr_4954 0.36 +0.1
5,872,403 - Psyr_4954 0.36 -0.1
5,872,403 - Psyr_4954 0.36 +1.8
5,872,403 - Psyr_4954 0.36 +0.0
5,872,403 - Psyr_4954 0.36 +0.4
5,872,403 - Psyr_4954 0.36 -0.0
5,872,403 - Psyr_4954 0.36 +0.6
5,872,403 - Psyr_4954 0.36 -0.1
5,872,403 - Psyr_4954 0.36 -0.4
5,872,403 - Psyr_4954 0.36 +0.7
5,872,403 - Psyr_4954 0.36 +0.2
5,872,403 - Psyr_4954 0.36 +0.7
5,872,403 - Psyr_4954 0.36 -1.2
5,872,403 - Psyr_4954 0.36 -0.1
5,872,403 - Psyr_4954 0.36 +0.7
5,872,546 + Psyr_4954 0.45 -0.0
5,872,547 - Psyr_4954 0.45 +0.2
5,872,702 + Psyr_4954 0.56 +0.4
5,872,702 + Psyr_4954 0.56 +0.6
5,872,702 + Psyr_4954 0.56 +0.8
5,872,703 - Psyr_4954 0.56 -0.1
5,872,703 - Psyr_4954 0.56 +0.5
5,872,703 - Psyr_4954 0.56 -1.2
5,872,724 - Psyr_4954 0.57 +0.2
5,872,827 + Psyr_4954 0.64 -0.7
5,872,828 - Psyr_4954 0.64 +0.9
5,872,828 - Psyr_4954 0.64 -0.4
5,872,828 - Psyr_4954 0.64 -0.5
5,872,828 - Psyr_4954 0.64 -0.9
5,872,828 - Psyr_4954 0.64 +0.6
5,872,828 - Psyr_4954 0.64 +0.3

Or see this region's nucleotide sequence