Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1565

Experiment: KB with Anisodamine Hydrobromide () 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1563 and Psyr_1564 overlap by 4 nucleotidesPsyr_1564 and Psyr_1565 are separated by 70 nucleotidesPsyr_1565 and Psyr_1566 are separated by 66 nucleotidesPsyr_1566 and Psyr_1567 are separated by 210 nucleotides Psyr_1563: Psyr_1563 - Ribonuclease D, at 1,760,015 to 1,761,148 _1563 Psyr_1564: Psyr_1564 - Protein of unknown function DUF709, at 1,761,145 to 1,761,438 _1564 Psyr_1565: Psyr_1565 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 1,761,509 to 1,762,441 _1565 Psyr_1566: Psyr_1566 - Nitroreductase, at 1,762,508 to 1,763,101 _1566 Psyr_1567: Psyr_1567 - Uncharacterized conserved protein UCP006173, at 1,763,312 to 1,763,761 _1567 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1760.543 kb on + strand, within Psyr_1563at 1760.543 kb on + strand, within Psyr_1563at 1760.543 kb on + strand, within Psyr_1563at 1760.543 kb on + strand, within Psyr_1563at 1760.543 kb on + strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.544 kb on - strand, within Psyr_1563at 1760.615 kb on + strand, within Psyr_1563at 1760.616 kb on - strand, within Psyr_1563at 1761.193 kb on + strand, within Psyr_1564at 1761.193 kb on + strand, within Psyr_1564at 1761.193 kb on + strand, within Psyr_1564at 1761.194 kb on - strand, within Psyr_1564at 1761.194 kb on - strand, within Psyr_1564at 1761.194 kb on - strand, within Psyr_1564at 1761.194 kb on - strand, within Psyr_1564at 1761.199 kb on + strand, within Psyr_1564at 1761.199 kb on + strand, within Psyr_1564at 1761.200 kb on - strand, within Psyr_1564at 1761.200 kb on - strand, within Psyr_1564at 1761.200 kb on - strand, within Psyr_1564at 1761.200 kb on - strand, within Psyr_1564at 1761.200 kb on - strand, within Psyr_1564at 1761.200 kb on - strand, within Psyr_1564at 1761.318 kb on + strand, within Psyr_1564at 1761.319 kb on - strand, within Psyr_1564at 1761.356 kb on - strand, within Psyr_1564at 1761.388 kb on + strand, within Psyr_1564at 1761.388 kb on + strand, within Psyr_1564at 1761.388 kb on + strand, within Psyr_1564at 1761.388 kb on + strand, within Psyr_1564at 1761.389 kb on - strand, within Psyr_1564at 1761.436 kb on + strandat 1761.436 kb on + strandat 1761.436 kb on + strandat 1761.436 kb on + strandat 1761.436 kb on + strandat 1761.436 kb on + strandat 1761.437 kb on - strandat 1761.437 kb on - strandat 1761.454 kb on + strandat 1761.455 kb on - strandat 1761.455 kb on - strandat 1761.545 kb on + strandat 1761.545 kb on + strandat 1761.545 kb on + strandat 1761.545 kb on + strandat 1761.546 kb on - strandat 1761.546 kb on - strandat 1761.546 kb on - strandat 1761.546 kb on - strandat 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.818 kb on + strand, within Psyr_1565at 1761.819 kb on - strand, within Psyr_1565at 1761.819 kb on - strand, within Psyr_1565at 1761.819 kb on - strand, within Psyr_1565at 1761.819 kb on - strand, within Psyr_1565at 1761.819 kb on - strand, within Psyr_1565at 1761.989 kb on + strand, within Psyr_1565at 1761.990 kb on - strand, within Psyr_1565at 1761.990 kb on - strand, within Psyr_1565at 1762.079 kb on + strand, within Psyr_1565at 1762.079 kb on + strand, within Psyr_1565at 1762.080 kb on - strand, within Psyr_1565at 1762.080 kb on - strand, within Psyr_1565at 1762.080 kb on - strand, within Psyr_1565at 1762.080 kb on - strand, within Psyr_1565at 1762.080 kb on - strand, within Psyr_1565at 1762.080 kb on - strand, within Psyr_1565at 1762.304 kb on + strand, within Psyr_1565at 1762.304 kb on + strand, within Psyr_1565at 1762.304 kb on + strand, within Psyr_1565at 1762.510 kb on - strandat 1762.584 kb on + strand, within Psyr_1566at 1762.584 kb on + strand, within Psyr_1566at 1762.657 kb on + strand, within Psyr_1566at 1762.658 kb on - strand, within Psyr_1566at 1762.743 kb on + strand, within Psyr_1566at 1762.897 kb on - strand, within Psyr_1566at 1762.929 kb on + strand, within Psyr_1566at 1762.929 kb on + strand, within Psyr_1566at 1762.930 kb on - strand, within Psyr_1566at 1762.930 kb on - strand, within Psyr_1566at 1762.954 kb on + strand, within Psyr_1566at 1762.956 kb on + strand, within Psyr_1566at 1762.956 kb on + strand, within Psyr_1566at 1762.956 kb on + strand, within Psyr_1566at 1762.957 kb on - strand, within Psyr_1566at 1762.957 kb on - strand, within Psyr_1566at 1763.196 kb on - strandat 1763.264 kb on + strandat 1763.264 kb on + strandat 1763.265 kb on - strandat 1763.270 kb on + strandat 1763.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anisodamine Hydrobromide () 10 mM
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1,760,543 + Psyr_1563 0.47 +0.1
1,760,543 + Psyr_1563 0.47 -1.5
1,760,543 + Psyr_1563 0.47 +1.0
1,760,543 + Psyr_1563 0.47 -1.3
1,760,543 + Psyr_1563 0.47 -0.6
1,760,544 - Psyr_1563 0.47 +0.6
1,760,544 - Psyr_1563 0.47 -2.0
1,760,544 - Psyr_1563 0.47 -0.6
1,760,544 - Psyr_1563 0.47 -1.4
1,760,544 - Psyr_1563 0.47 +0.8
1,760,544 - Psyr_1563 0.47 -0.7
1,760,544 - Psyr_1563 0.47 -0.0
1,760,544 - Psyr_1563 0.47 -1.2
1,760,544 - Psyr_1563 0.47 -2.1
1,760,615 + Psyr_1563 0.53 -0.2
1,760,616 - Psyr_1563 0.53 -1.0
1,761,193 + Psyr_1564 0.16 -1.7
1,761,193 + Psyr_1564 0.16 -1.2
1,761,193 + Psyr_1564 0.16 -1.4
1,761,194 - Psyr_1564 0.17 -1.0
1,761,194 - Psyr_1564 0.17 -0.3
1,761,194 - Psyr_1564 0.17 -1.1
1,761,194 - Psyr_1564 0.17 -2.1
1,761,199 + Psyr_1564 0.18 +0.3
1,761,199 + Psyr_1564 0.18 -1.0
1,761,200 - Psyr_1564 0.19 +0.5
1,761,200 - Psyr_1564 0.19 +0.4
1,761,200 - Psyr_1564 0.19 +3.0
1,761,200 - Psyr_1564 0.19 -2.0
1,761,200 - Psyr_1564 0.19 -1.3
1,761,200 - Psyr_1564 0.19 +0.8
1,761,318 + Psyr_1564 0.59 -0.6
1,761,319 - Psyr_1564 0.59 -2.0
1,761,356 - Psyr_1564 0.72 -0.4
1,761,388 + Psyr_1564 0.83 -2.3
1,761,388 + Psyr_1564 0.83 -1.2
1,761,388 + Psyr_1564 0.83 -1.0
1,761,388 + Psyr_1564 0.83 +1.2
1,761,389 - Psyr_1564 0.83 -1.1
1,761,436 + -0.8
1,761,436 + +0.7
1,761,436 + +1.1
1,761,436 + -0.0
1,761,436 + -0.9
1,761,436 + +0.3
1,761,437 - -1.2
1,761,437 - +0.3
1,761,454 + -1.1
1,761,455 - +0.6
1,761,455 - -1.6
1,761,545 + -0.6
1,761,545 + +0.2
1,761,545 + -0.4
1,761,545 + +0.1
1,761,546 - -0.0
1,761,546 - -0.9
1,761,546 - -2.1
1,761,546 - +0.3
1,761,818 + Psyr_1565 0.33 +1.8
1,761,818 + Psyr_1565 0.33 -0.7
1,761,818 + Psyr_1565 0.33 -0.5
1,761,818 + Psyr_1565 0.33 +0.6
1,761,818 + Psyr_1565 0.33 +0.9
1,761,818 + Psyr_1565 0.33 +0.1
1,761,818 + Psyr_1565 0.33 -0.6
1,761,818 + Psyr_1565 0.33 -0.2
1,761,819 - Psyr_1565 0.33 +0.6
1,761,819 - Psyr_1565 0.33 -0.8
1,761,819 - Psyr_1565 0.33 +0.3
1,761,819 - Psyr_1565 0.33 +0.5
1,761,819 - Psyr_1565 0.33 +1.6
1,761,989 + Psyr_1565 0.51 +0.1
1,761,990 - Psyr_1565 0.52 -0.5
1,761,990 - Psyr_1565 0.52 -0.9
1,762,079 + Psyr_1565 0.61 +3.2
1,762,079 + Psyr_1565 0.61 +0.2
1,762,080 - Psyr_1565 0.61 -1.2
1,762,080 - Psyr_1565 0.61 -0.4
1,762,080 - Psyr_1565 0.61 -0.2
1,762,080 - Psyr_1565 0.61 -0.2
1,762,080 - Psyr_1565 0.61 +0.6
1,762,080 - Psyr_1565 0.61 -0.1
1,762,304 + Psyr_1565 0.85 -0.6
1,762,304 + Psyr_1565 0.85 +0.2
1,762,304 + Psyr_1565 0.85 +0.8
1,762,510 - +0.1
1,762,584 + Psyr_1566 0.13 +0.2
1,762,584 + Psyr_1566 0.13 +0.8
1,762,657 + Psyr_1566 0.25 +0.1
1,762,658 - Psyr_1566 0.25 -0.5
1,762,743 + Psyr_1566 0.40 +1.9
1,762,897 - Psyr_1566 0.65 +1.9
1,762,929 + Psyr_1566 0.71 +0.2
1,762,929 + Psyr_1566 0.71 +1.3
1,762,930 - Psyr_1566 0.71 +0.6
1,762,930 - Psyr_1566 0.71 -1.9
1,762,954 + Psyr_1566 0.75 +0.9
1,762,956 + Psyr_1566 0.75 +0.3
1,762,956 + Psyr_1566 0.75 -0.7
1,762,956 + Psyr_1566 0.75 +0.1
1,762,957 - Psyr_1566 0.76 -0.6
1,762,957 - Psyr_1566 0.76 +1.8
1,763,196 - +1.7
1,763,264 + -0.3
1,763,264 + +0.2
1,763,265 - -1.3
1,763,270 + -0.3
1,763,271 - +1.0

Or see this region's nucleotide sequence