Strain Fitness in Marinobacter adhaerens HP15 around HP15_945

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_944 and HP15_945 are separated by 345 nucleotidesHP15_945 and HP15_946 are separated by 89 nucleotidesHP15_946 and HP15_947 overlap by 4 nucleotides HP15_944: HP15_944 - FAD dependent oxidoreductase, at 960,226 to 961,452 _944 HP15_945: HP15_945 - protein containing immunoglobulin I-set domain, at 961,798 to 963,255 _945 HP15_946: HP15_946 - conserved hypothetical protein, at 963,345 to 963,581 _946 HP15_947: HP15_947 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 963,578 to 964,903 _947 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 960.810 kb on + strand, within HP15_944at 960.833 kb on - strand, within HP15_944at 961.077 kb on + strand, within HP15_944at 961.085 kb on - strand, within HP15_944at 961.254 kb on + strand, within HP15_944at 961.273 kb on - strand, within HP15_944at 961.334 kb on + strandat 961.635 kb on - strandat 961.637 kb on - strandat 961.637 kb on - strandat 961.637 kb on - strandat 961.894 kb on - strandat 961.900 kb on + strandat 961.908 kb on - strandat 961.908 kb on - strandat 962.006 kb on - strand, within HP15_945at 962.050 kb on - strand, within HP15_945at 962.072 kb on + strand, within HP15_945at 962.080 kb on - strand, within HP15_945at 962.110 kb on + strand, within HP15_945at 962.139 kb on + strand, within HP15_945at 962.240 kb on + strand, within HP15_945at 962.240 kb on + strand, within HP15_945at 962.241 kb on + strand, within HP15_945at 962.293 kb on - strand, within HP15_945at 962.386 kb on - strand, within HP15_945at 962.396 kb on - strand, within HP15_945at 962.526 kb on + strand, within HP15_945at 962.544 kb on + strand, within HP15_945at 962.547 kb on - strand, within HP15_945at 962.549 kb on + strand, within HP15_945at 962.559 kb on - strand, within HP15_945at 962.584 kb on + strand, within HP15_945at 962.592 kb on - strand, within HP15_945at 962.610 kb on - strand, within HP15_945at 962.612 kb on + strand, within HP15_945at 962.620 kb on + strand, within HP15_945at 962.620 kb on - strand, within HP15_945at 962.620 kb on - strand, within HP15_945at 962.620 kb on - strand, within HP15_945at 962.683 kb on + strand, within HP15_945at 962.691 kb on - strand, within HP15_945at 962.699 kb on - strand, within HP15_945at 962.754 kb on - strand, within HP15_945at 962.885 kb on + strand, within HP15_945at 962.930 kb on + strand, within HP15_945at 962.975 kb on - strand, within HP15_945at 962.985 kb on - strand, within HP15_945at 962.996 kb on + strand, within HP15_945at 962.997 kb on - strand, within HP15_945at 963.012 kb on - strand, within HP15_945at 963.185 kb on + strandat 963.313 kb on - strandat 963.360 kb on - strandat 963.411 kb on - strand, within HP15_946at 963.411 kb on - strand, within HP15_946at 963.474 kb on - strand, within HP15_946at 963.603 kb on + strandat 963.651 kb on + strandat 963.659 kb on - strandat 963.659 kb on - strandat 963.659 kb on - strandat 963.795 kb on - strand, within HP15_947at 963.795 kb on - strand, within HP15_947at 963.837 kb on + strand, within HP15_947at 963.837 kb on + strand, within HP15_947at 963.845 kb on - strand, within HP15_947at 963.859 kb on - strand, within HP15_947at 963.943 kb on + strand, within HP15_947at 964.075 kb on + strand, within HP15_947at 964.083 kb on - strand, within HP15_947at 964.088 kb on - strand, within HP15_947at 964.239 kb on - strand, within HP15_947at 964.242 kb on + strand, within HP15_947

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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960,810 + HP15_944 0.48 -2.1
960,833 - HP15_944 0.49 -0.8
961,077 + HP15_944 0.69 -2.0
961,085 - HP15_944 0.70 -0.2
961,254 + HP15_944 0.84 -0.3
961,273 - HP15_944 0.85 +1.7
961,334 + -0.6
961,635 - -0.7
961,637 - -1.0
961,637 - -0.5
961,637 - +1.3
961,894 - +0.4
961,900 + -0.6
961,908 - -1.8
961,908 - +0.7
962,006 - HP15_945 0.14 +0.4
962,050 - HP15_945 0.17 -0.2
962,072 + HP15_945 0.19 +0.1
962,080 - HP15_945 0.19 +0.3
962,110 + HP15_945 0.21 -0.8
962,139 + HP15_945 0.23 +1.7
962,240 + HP15_945 0.30 -0.3
962,240 + HP15_945 0.30 +1.3
962,241 + HP15_945 0.30 +1.0
962,293 - HP15_945 0.34 +0.3
962,386 - HP15_945 0.40 +1.1
962,396 - HP15_945 0.41 -0.4
962,526 + HP15_945 0.50 +0.2
962,544 + HP15_945 0.51 -0.5
962,547 - HP15_945 0.51 -0.6
962,549 + HP15_945 0.52 +1.1
962,559 - HP15_945 0.52 +0.1
962,584 + HP15_945 0.54 -0.3
962,592 - HP15_945 0.54 +1.2
962,610 - HP15_945 0.56 -0.0
962,612 + HP15_945 0.56 -0.0
962,620 + HP15_945 0.56 +0.3
962,620 - HP15_945 0.56 -1.6
962,620 - HP15_945 0.56 +0.1
962,620 - HP15_945 0.56 +0.3
962,683 + HP15_945 0.61 -0.6
962,691 - HP15_945 0.61 +0.1
962,699 - HP15_945 0.62 +0.0
962,754 - HP15_945 0.66 -2.6
962,885 + HP15_945 0.75 +0.6
962,930 + HP15_945 0.78 +1.7
962,975 - HP15_945 0.81 +1.5
962,985 - HP15_945 0.81 +0.0
962,996 + HP15_945 0.82 +0.6
962,997 - HP15_945 0.82 -0.4
963,012 - HP15_945 0.83 -0.2
963,185 + +0.9
963,313 - +0.5
963,360 - +2.3
963,411 - HP15_946 0.28 -0.8
963,411 - HP15_946 0.28 -0.9
963,474 - HP15_946 0.54 -0.7
963,603 + -0.2
963,651 + +0.4
963,659 - -0.5
963,659 - -1.3
963,659 - -0.1
963,795 - HP15_947 0.16 +1.3
963,795 - HP15_947 0.16 +0.1
963,837 + HP15_947 0.20 -1.1
963,837 + HP15_947 0.20 -2.3
963,845 - HP15_947 0.20 -1.6
963,859 - HP15_947 0.21 -1.8
963,943 + HP15_947 0.28 -1.0
964,075 + HP15_947 0.37 +0.9
964,083 - HP15_947 0.38 +1.4
964,088 - HP15_947 0.38 +0.6
964,239 - HP15_947 0.50 +0.6
964,242 + HP15_947 0.50 +0.3

Or see this region's nucleotide sequence