Strain Fitness in Marinobacter adhaerens HP15 around HP15_862

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_860 and HP15_861 are separated by 68 nucleotidesHP15_861 and HP15_862 are separated by 178 nucleotidesHP15_862 and HP15_863 are separated by 142 nucleotides HP15_860: HP15_860 - transcriptional regulator, AsnC family protein, at 880,036 to 880,515 _860 HP15_861: HP15_861 - cold shock, CspA, at 880,584 to 880,814 _861 HP15_862: HP15_862 - signal transduction protein containing a membrane domain, an EAL and a GGDEF domain, at 880,993 to 884,754 _862 HP15_863: HP15_863 - ribonuclease Z, at 884,897 to 885,868 _863 Position (kb) 880 881 882 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 880.172 kb on - strand, within HP15_860at 880.177 kb on - strand, within HP15_860at 880.177 kb on - strand, within HP15_860at 880.202 kb on + strand, within HP15_860at 880.208 kb on - strand, within HP15_860at 880.300 kb on - strand, within HP15_860at 880.334 kb on + strand, within HP15_860at 880.335 kb on - strand, within HP15_860at 880.370 kb on + strand, within HP15_860at 880.370 kb on + strand, within HP15_860at 880.370 kb on + strand, within HP15_860at 880.378 kb on - strand, within HP15_860at 880.378 kb on - strand, within HP15_860at 880.378 kb on - strand, within HP15_860at 880.394 kb on + strand, within HP15_860at 880.620 kb on - strand, within HP15_861at 880.848 kb on + strandat 880.909 kb on - strandat 880.961 kb on + strandat 880.972 kb on - strandat 881.033 kb on + strandat 881.043 kb on + strandat 881.089 kb on + strandat 881.100 kb on + strandat 881.108 kb on - strandat 881.108 kb on - strandat 881.134 kb on - strandat 881.154 kb on - strandat 881.386 kb on + strand, within HP15_862at 881.394 kb on - strand, within HP15_862at 881.397 kb on + strand, within HP15_862at 881.548 kb on + strand, within HP15_862at 881.607 kb on - strand, within HP15_862at 881.623 kb on - strand, within HP15_862at 881.623 kb on - strand, within HP15_862at 881.623 kb on - strand, within HP15_862at 881.732 kb on - strand, within HP15_862at 881.738 kb on - strand, within HP15_862at 881.780 kb on - strand, within HP15_862at 881.783 kb on + strand, within HP15_862at 881.886 kb on + strand, within HP15_862at 881.937 kb on - strand, within HP15_862at 881.976 kb on + strand, within HP15_862at 881.999 kb on - strand, within HP15_862at 882.024 kb on - strand, within HP15_862at 882.026 kb on - strand, within HP15_862at 882.031 kb on - strand, within HP15_862at 882.031 kb on - strand, within HP15_862at 882.032 kb on + strand, within HP15_862at 882.053 kb on - strand, within HP15_862at 882.074 kb on + strand, within HP15_862at 882.082 kb on - strand, within HP15_862at 882.167 kb on + strand, within HP15_862at 882.242 kb on + strand, within HP15_862at 882.255 kb on + strand, within HP15_862at 882.274 kb on + strand, within HP15_862at 882.274 kb on - strand, within HP15_862at 882.303 kb on - strand, within HP15_862at 882.312 kb on - strand, within HP15_862at 882.372 kb on + strand, within HP15_862at 882.372 kb on + strand, within HP15_862at 882.446 kb on + strand, within HP15_862at 882.505 kb on + strand, within HP15_862at 882.513 kb on - strand, within HP15_862at 882.513 kb on - strand, within HP15_862at 882.513 kb on - strand, within HP15_862at 882.657 kb on + strand, within HP15_862at 882.657 kb on + strand, within HP15_862at 882.845 kb on + strand, within HP15_862at 882.845 kb on + strand, within HP15_862at 882.853 kb on - strand, within HP15_862at 882.868 kb on + strand, within HP15_862at 882.873 kb on + strand, within HP15_862at 882.883 kb on + strand, within HP15_862at 882.892 kb on + strand, within HP15_862at 883.001 kb on - strand, within HP15_862at 883.006 kb on - strand, within HP15_862at 883.141 kb on + strand, within HP15_862at 883.416 kb on + strand, within HP15_862at 883.452 kb on - strand, within HP15_862at 883.472 kb on + strand, within HP15_862at 883.490 kb on + strand, within HP15_862at 883.532 kb on - strand, within HP15_862at 883.557 kb on + strand, within HP15_862at 883.587 kb on - strand, within HP15_862at 883.659 kb on + strand, within HP15_862at 883.754 kb on - strand, within HP15_862at 883.819 kb on - strand, within HP15_862at 883.897 kb on - strand, within HP15_862at 883.902 kb on + strand, within HP15_862at 883.920 kb on - strand, within HP15_862at 883.920 kb on - strand, within HP15_862at 883.942 kb on + strand, within HP15_862at 883.945 kb on + strand, within HP15_862at 884.151 kb on + strand, within HP15_862at 884.151 kb on + strand, within HP15_862at 884.171 kb on + strand, within HP15_862at 884.179 kb on - strand, within HP15_862at 884.252 kb on + strand, within HP15_862at 884.270 kb on - strand, within HP15_862at 884.270 kb on - strand, within HP15_862at 884.295 kb on + strand, within HP15_862at 884.386 kb on - strandat 884.466 kb on - strandat 884.473 kb on - strandat 884.497 kb on + strandat 884.579 kb on - strandat 884.653 kb on - strandat 884.653 kb on - strandat 884.677 kb on + strandat 884.685 kb on + strandat 884.733 kb on + strandat 884.741 kb on - strandat 884.743 kb on + strandat 884.771 kb on - strandat 884.946 kb on - strandat 885.013 kb on - strand, within HP15_863at 885.069 kb on - strand, within HP15_863at 885.120 kb on + strand, within HP15_863at 885.137 kb on + strand, within HP15_863at 885.210 kb on + strand, within HP15_863at 885.341 kb on - strand, within HP15_863at 885.381 kb on + strand, within HP15_863at 885.386 kb on + strand, within HP15_863at 885.394 kb on - strand, within HP15_863at 885.460 kb on - strand, within HP15_863at 885.461 kb on - strand, within HP15_863at 885.500 kb on + strand, within HP15_863at 885.552 kb on + strand, within HP15_863at 885.613 kb on - strand, within HP15_863at 885.613 kb on - strand, within HP15_863at 885.628 kb on + strand, within HP15_863

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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880,172 - HP15_860 0.28 +0.0
880,177 - HP15_860 0.29 -0.5
880,177 - HP15_860 0.29 +1.1
880,202 + HP15_860 0.35 +0.5
880,208 - HP15_860 0.36 +0.4
880,300 - HP15_860 0.55 -0.3
880,334 + HP15_860 0.62 -0.4
880,335 - HP15_860 0.62 +0.9
880,370 + HP15_860 0.70 -0.3
880,370 + HP15_860 0.70 +0.7
880,370 + HP15_860 0.70 -1.1
880,378 - HP15_860 0.71 -1.8
880,378 - HP15_860 0.71 -2.4
880,378 - HP15_860 0.71 +0.6
880,394 + HP15_860 0.75 +0.8
880,620 - HP15_861 0.16 -0.3
880,848 + +1.1
880,909 - -0.2
880,961 + +1.4
880,972 - -0.1
881,033 + -1.1
881,043 + +0.1
881,089 + +1.6
881,100 + +0.5
881,108 - -0.5
881,108 - +0.8
881,134 - -1.1
881,154 - +0.3
881,386 + HP15_862 0.10 +0.4
881,394 - HP15_862 0.11 -1.3
881,397 + HP15_862 0.11 -1.3
881,548 + HP15_862 0.15 -0.2
881,607 - HP15_862 0.16 +0.9
881,623 - HP15_862 0.17 -0.6
881,623 - HP15_862 0.17 -0.0
881,623 - HP15_862 0.17 +1.1
881,732 - HP15_862 0.20 -2.1
881,738 - HP15_862 0.20 -0.0
881,780 - HP15_862 0.21 -1.1
881,783 + HP15_862 0.21 -0.3
881,886 + HP15_862 0.24 +1.4
881,937 - HP15_862 0.25 +0.5
881,976 + HP15_862 0.26 -0.7
881,999 - HP15_862 0.27 +0.1
882,024 - HP15_862 0.27 -0.1
882,026 - HP15_862 0.27 -0.9
882,031 - HP15_862 0.28 -0.6
882,031 - HP15_862 0.28 -0.5
882,032 + HP15_862 0.28 +2.5
882,053 - HP15_862 0.28 -0.4
882,074 + HP15_862 0.29 -1.3
882,082 - HP15_862 0.29 -0.3
882,167 + HP15_862 0.31 +0.0
882,242 + HP15_862 0.33 +1.0
882,255 + HP15_862 0.34 -0.6
882,274 + HP15_862 0.34 +0.3
882,274 - HP15_862 0.34 +0.4
882,303 - HP15_862 0.35 -0.6
882,312 - HP15_862 0.35 +0.7
882,372 + HP15_862 0.37 -1.2
882,372 + HP15_862 0.37 -1.2
882,446 + HP15_862 0.39 -0.9
882,505 + HP15_862 0.40 -1.5
882,513 - HP15_862 0.40 +1.1
882,513 - HP15_862 0.40 +0.4
882,513 - HP15_862 0.40 -0.2
882,657 + HP15_862 0.44 +1.0
882,657 + HP15_862 0.44 -1.1
882,845 + HP15_862 0.49 +0.2
882,845 + HP15_862 0.49 -1.9
882,853 - HP15_862 0.49 -0.0
882,868 + HP15_862 0.50 -0.2
882,873 + HP15_862 0.50 +0.2
882,883 + HP15_862 0.50 +0.5
882,892 + HP15_862 0.50 -1.5
883,001 - HP15_862 0.53 +1.6
883,006 - HP15_862 0.54 -1.2
883,141 + HP15_862 0.57 +2.1
883,416 + HP15_862 0.64 +0.8
883,452 - HP15_862 0.65 +0.8
883,472 + HP15_862 0.66 -0.3
883,490 + HP15_862 0.66 -1.3
883,532 - HP15_862 0.67 -0.8
883,557 + HP15_862 0.68 -1.2
883,587 - HP15_862 0.69 -0.9
883,659 + HP15_862 0.71 -0.5
883,754 - HP15_862 0.73 -0.4
883,819 - HP15_862 0.75 +0.8
883,897 - HP15_862 0.77 +0.7
883,902 + HP15_862 0.77 -0.0
883,920 - HP15_862 0.78 -0.5
883,920 - HP15_862 0.78 -0.4
883,942 + HP15_862 0.78 +1.8
883,945 + HP15_862 0.78 +0.3
884,151 + HP15_862 0.84 +0.8
884,151 + HP15_862 0.84 -0.0
884,171 + HP15_862 0.84 -1.3
884,179 - HP15_862 0.85 +0.6
884,252 + HP15_862 0.87 +0.9
884,270 - HP15_862 0.87 -0.7
884,270 - HP15_862 0.87 +1.6
884,295 + HP15_862 0.88 -1.3
884,386 - +0.5
884,466 - -1.3
884,473 - +1.7
884,497 + +0.4
884,579 - +0.7
884,653 - -0.2
884,653 - -1.1
884,677 + +2.1
884,685 + -0.2
884,733 + -3.2
884,741 - -0.4
884,743 + -3.0
884,771 - +1.2
884,946 - +1.8
885,013 - HP15_863 0.12 -0.2
885,069 - HP15_863 0.18 -0.4
885,120 + HP15_863 0.23 +1.2
885,137 + HP15_863 0.25 -2.2
885,210 + HP15_863 0.32 +0.4
885,341 - HP15_863 0.46 -0.3
885,381 + HP15_863 0.50 +0.1
885,386 + HP15_863 0.50 -1.5
885,394 - HP15_863 0.51 +1.4
885,460 - HP15_863 0.58 +0.5
885,461 - HP15_863 0.58 +1.4
885,500 + HP15_863 0.62 -0.0
885,552 + HP15_863 0.67 -0.2
885,613 - HP15_863 0.74 +0.4
885,613 - HP15_863 0.74 +0.4
885,628 + HP15_863 0.75 +0.4

Or see this region's nucleotide sequence