Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_830 and HP15_831 are separated by 2 nucleotides HP15_831 and HP15_832 are separated by 192 nucleotides HP15_832 and HP15_833 are separated by 642 nucleotides
HP15_830: HP15_830 - conserved hypothetical protein, at 848,500 to 849,003
_830
HP15_831: HP15_831 - protein containing glutaredoxin domain, at 849,006 to 849,806
_831
HP15_832: HP15_832 - aldo/keto reductase-like diketogulonate reductase, at 849,999 to 850,934
_832
HP15_833: HP15_833 - 2,5-diketo-D-gluconic acid reductase B, at 851,577 to 852,386
_833
Position (kb) 849
850
851 Strain fitness (log2 ratio) -1
0
1
2 at 849.107 kb on - strand, within HP15_831 at 849.201 kb on + strand, within HP15_831 at 849.219 kb on - strand, within HP15_831 at 849.335 kb on - strand, within HP15_831 at 849.343 kb on + strand, within HP15_831 at 849.393 kb on + strand, within HP15_831 at 849.437 kb on - strand, within HP15_831 at 849.437 kb on - strand, within HP15_831 at 849.442 kb on - strand, within HP15_831 at 849.475 kb on + strand, within HP15_831 at 849.543 kb on + strand, within HP15_831 at 849.628 kb on - strand, within HP15_831 at 849.628 kb on - strand, within HP15_831 at 849.717 kb on - strand, within HP15_831 at 849.732 kb on - strand at 849.732 kb on - strand at 849.734 kb on + strand at 849.742 kb on - strand at 849.755 kb on + strand at 849.763 kb on - strand at 849.763 kb on - strand at 849.921 kb on + strand at 849.921 kb on - strand at 849.923 kb on + strand at 849.931 kb on + strand at 850.036 kb on + strand at 850.099 kb on - strand, within HP15_832 at 850.145 kb on - strand, within HP15_832 at 850.167 kb on - strand, within HP15_832 at 850.350 kb on + strand, within HP15_832 at 850.462 kb on + strand, within HP15_832 at 850.490 kb on + strand, within HP15_832 at 850.601 kb on + strand, within HP15_832 at 850.619 kb on - strand, within HP15_832 at 850.626 kb on + strand, within HP15_832 at 850.663 kb on + strand, within HP15_832 at 850.663 kb on + strand, within HP15_832 at 850.814 kb on - strand, within HP15_832 at 850.847 kb on - strand at 851.087 kb on + strand at 851.092 kb on + strand at 851.092 kb on + strand at 851.097 kb on + strand at 851.100 kb on - strand at 851.115 kb on - strand at 851.157 kb on + strand at 851.324 kb on + strand at 851.332 kb on - strand at 851.358 kb on + strand at 851.359 kb on + strand at 851.398 kb on - strand at 851.429 kb on + strand at 851.459 kb on - strand at 851.493 kb on - strand at 851.507 kb on - strand at 851.510 kb on + strand at 851.689 kb on + strand, within HP15_833 at 851.779 kb on - strand, within HP15_833 at 851.855 kb on + strand, within HP15_833 at 851.863 kb on - strand, within HP15_833 at 851.895 kb on - strand, within HP15_833 at 851.915 kb on + strand, within HP15_833
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 849,107 - HP15_831 0.13 -0.9 849,201 + HP15_831 0.24 +1.5 849,219 - HP15_831 0.27 -0.9 849,335 - HP15_831 0.41 -0.4 849,343 + HP15_831 0.42 +0.1 849,393 + HP15_831 0.48 +2.3 849,437 - HP15_831 0.54 +0.3 849,437 - HP15_831 0.54 -0.7 849,442 - HP15_831 0.54 +0.9 849,475 + HP15_831 0.59 +0.8 849,543 + HP15_831 0.67 -0.2 849,628 - HP15_831 0.78 -1.6 849,628 - HP15_831 0.78 +0.2 849,717 - HP15_831 0.89 +0.4 849,732 - +0.1 849,732 - +1.3 849,734 + +0.2 849,742 - +0.3 849,755 + -0.1 849,763 - -0.8 849,763 - -1.0 849,921 + +1.0 849,921 - +1.8 849,923 + -1.2 849,931 + +0.3 850,036 + -0.1 850,099 - HP15_832 0.11 +1.2 850,145 - HP15_832 0.16 +0.1 850,167 - HP15_832 0.18 -0.3 850,350 + HP15_832 0.38 -0.3 850,462 + HP15_832 0.49 -0.0 850,490 + HP15_832 0.52 -1.0 850,601 + HP15_832 0.64 +1.8 850,619 - HP15_832 0.66 +0.0 850,626 + HP15_832 0.67 -1.5 850,663 + HP15_832 0.71 -0.9 850,663 + HP15_832 0.71 +1.0 850,814 - HP15_832 0.87 -0.7 850,847 - +0.3 851,087 + +1.2 851,092 + +0.9 851,092 + +0.6 851,097 + +2.5 851,100 - +2.1 851,115 - +0.7 851,157 + +0.3 851,324 + -0.9 851,332 - +1.4 851,358 + -0.5 851,359 + -1.6 851,398 - +0.7 851,429 + +0.3 851,459 - +0.7 851,493 - +0.7 851,507 - -0.7 851,510 + -1.1 851,689 + HP15_833 0.14 +0.1 851,779 - HP15_833 0.25 -0.6 851,855 + HP15_833 0.34 -0.3 851,863 - HP15_833 0.35 +0.4 851,895 - HP15_833 0.39 -0.2 851,915 + HP15_833 0.42 +1.7
Or see this region's nucleotide sequence