Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_801 and HP15_803 are separated by 26 nucleotides HP15_803 and HP15_804 overlap by 23 nucleotides HP15_804 and HP15_805 are separated by 48 nucleotides HP15_805 and HP15_806 are separated by 158 nucleotides
HP15_801: HP15_801 - NADH pyrophosphatase, at 817,991 to 818,818
_801
HP15_803: HP15_803 - glutamate racemase, at 818,845 to 819,678
_803
HP15_804: HP15_804 - protein containing DUF470, at 819,656 to 820,663
_804
HP15_805: HP15_805 - methylase involved in ubiquinone/menaquinone biosynthesis, at 820,712 to 821,440
_805
HP15_806: HP15_806 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 821,599 to 823,773
_806
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.612 kb on + strand at 819.646 kb on + strand at 819.853 kb on + strand, within HP15_804 at 820.168 kb on + strand, within HP15_804 at 820.238 kb on + strand, within HP15_804 at 820.246 kb on - strand, within HP15_804 at 820.313 kb on + strand, within HP15_804 at 820.365 kb on + strand, within HP15_804 at 820.423 kb on - strand, within HP15_804 at 820.562 kb on - strand, within HP15_804 at 820.616 kb on + strand at 820.616 kb on + strand at 820.616 kb on + strand at 820.624 kb on - strand at 820.626 kb on - strand at 820.627 kb on + strand at 820.640 kb on - strand at 820.640 kb on - strand at 820.710 kb on + strand at 820.800 kb on - strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.855 kb on + strand, within HP15_805 at 821.027 kb on + strand, within HP15_805 at 821.176 kb on + strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 819,612 + -2.1 819,646 + +0.7 819,853 + HP15_804 0.20 +1.6 820,168 + HP15_804 0.51 -0.4 820,238 + HP15_804 0.58 +1.1 820,246 - HP15_804 0.59 -0.3 820,313 + HP15_804 0.65 -0.1 820,365 + HP15_804 0.70 +1.3 820,423 - HP15_804 0.76 +0.5 820,562 - HP15_804 0.90 +1.5 820,616 + +1.1 820,616 + -0.1 820,616 + -0.6 820,624 - +0.2 820,626 - +1.0 820,627 + -0.5 820,640 - +0.6 820,640 - -0.6 820,710 + +0.3 820,800 - HP15_805 0.12 -0.7 820,820 + HP15_805 0.15 -0.1 820,820 + HP15_805 0.15 +1.9 820,855 + HP15_805 0.20 -1.9 821,027 + HP15_805 0.43 -1.0 821,176 + HP15_805 0.64 -0.5 821,184 - HP15_805 0.65 -3.7 821,184 - HP15_805 0.65 +0.5 821,490 + -1.1
Or see this region's nucleotide sequence