Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4009 and HP15_4010 are separated by 2 nucleotides HP15_4010 and HP15_4011 are separated by 68 nucleotides HP15_4011 and HP15_4012 are separated by 78 nucleotides HP15_4012 and HP15_4013 are separated by 70 nucleotides
HP15_4009: HP15_4009 - flagellar motor protein MotB, at 4,244,612 to 4,245,535
_4009
HP15_4010: HP15_4010 - flagellar motor protein PomA, at 4,245,538 to 4,246,308
_4010
HP15_4011: HP15_4011 - protein containing DUF1232, at 4,246,377 to 4,246,796
_4011
HP15_4012: HP15_4012 - conserved hypothetical protein, at 4,246,875 to 4,247,132
_4012
HP15_4013: HP15_4013 - DTW domain containing protein, at 4,247,203 to 4,247,709
_4013
Position (kb) 4246
4247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4245.431 kb on + strand, within HP15_4009 at 4245.618 kb on + strand, within HP15_4010 at 4245.638 kb on - strand, within HP15_4010 at 4245.683 kb on + strand, within HP15_4010 at 4245.693 kb on + strand, within HP15_4010 at 4245.757 kb on + strand, within HP15_4010 at 4245.815 kb on + strand, within HP15_4010 at 4245.861 kb on - strand, within HP15_4010 at 4245.988 kb on - strand, within HP15_4010 at 4246.139 kb on + strand, within HP15_4010 at 4246.445 kb on - strand, within HP15_4011 at 4246.458 kb on + strand, within HP15_4011 at 4246.543 kb on + strand, within HP15_4011 at 4246.551 kb on - strand, within HP15_4011 at 4246.694 kb on - strand, within HP15_4011 at 4246.696 kb on - strand, within HP15_4011 at 4246.802 kb on + strand at 4246.830 kb on + strand at 4246.836 kb on - strand at 4246.911 kb on + strand, within HP15_4012 at 4246.911 kb on + strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.983 kb on - strand, within HP15_4012 at 4247.036 kb on + strand, within HP15_4012 at 4247.044 kb on - strand, within HP15_4012 at 4247.066 kb on - strand, within HP15_4012 at 4247.114 kb on + strand at 4247.136 kb on - strand at 4247.221 kb on - strand at 4247.251 kb on + strand at 4247.295 kb on + strand, within HP15_4013 at 4247.295 kb on + strand, within HP15_4013 at 4247.344 kb on - strand, within HP15_4013 at 4247.375 kb on + strand, within HP15_4013 at 4247.505 kb on + strand, within HP15_4013 at 4247.531 kb on - strand, within HP15_4013 at 4247.590 kb on - strand, within HP15_4013 at 4247.623 kb on - strand, within HP15_4013 at 4247.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 4,245,431 + HP15_4009 0.89 +1.4 4,245,618 + HP15_4010 0.10 -0.2 4,245,638 - HP15_4010 0.13 -1.3 4,245,683 + HP15_4010 0.19 +0.8 4,245,693 + HP15_4010 0.20 -0.1 4,245,757 + HP15_4010 0.28 -0.6 4,245,815 + HP15_4010 0.36 +0.3 4,245,861 - HP15_4010 0.42 +0.2 4,245,988 - HP15_4010 0.58 +0.2 4,246,139 + HP15_4010 0.78 +2.1 4,246,445 - HP15_4011 0.16 -0.8 4,246,458 + HP15_4011 0.19 -2.6 4,246,543 + HP15_4011 0.40 -0.8 4,246,551 - HP15_4011 0.41 -0.5 4,246,694 - HP15_4011 0.75 +0.1 4,246,696 - HP15_4011 0.76 -1.2 4,246,802 + +1.8 4,246,830 + +0.2 4,246,836 - -2.0 4,246,911 + HP15_4012 0.14 -1.9 4,246,911 + HP15_4012 0.14 +0.6 4,246,919 - HP15_4012 0.17 -1.0 4,246,919 - HP15_4012 0.17 -0.1 4,246,919 - HP15_4012 0.17 +2.2 4,246,926 - HP15_4012 0.20 +0.9 4,246,926 - HP15_4012 0.20 +0.9 4,246,983 - HP15_4012 0.42 +0.3 4,247,036 + HP15_4012 0.62 +0.7 4,247,044 - HP15_4012 0.66 +1.2 4,247,066 - HP15_4012 0.74 -1.4 4,247,114 + +0.1 4,247,136 - +2.1 4,247,221 - +2.1 4,247,251 + +1.3 4,247,295 + HP15_4013 0.18 -0.3 4,247,295 + HP15_4013 0.18 -0.9 4,247,344 - HP15_4013 0.28 -1.5 4,247,375 + HP15_4013 0.34 -0.5 4,247,505 + HP15_4013 0.60 -0.4 4,247,531 - HP15_4013 0.65 +1.1 4,247,590 - HP15_4013 0.76 +0.3 4,247,623 - HP15_4013 0.83 -0.1 4,247,660 + +0.4
Or see this region's nucleotide sequence