Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3873 and HP15_3874 are separated by 367 nucleotides HP15_3874 and HP15_3875 are separated by 9 nucleotides
HP15_3873: HP15_3873 - transcriptional regulator, AraC family protein, at 4,099,520 to 4,100,626
_3873
HP15_3874: HP15_3874 - membrane protein containing TM2 domains, at 4,100,994 to 4,101,401
_3874
HP15_3875: HP15_3875 - acyltransferase, WS/DGAT/MGAT, at 4,101,411 to 4,102,778
_3875
Position (kb)
4100
4101
4102 Strain fitness (log2 ratio)
-2
-1
0
1 at 4099.999 kb on - strand, within HP15_3873 at 4100.097 kb on + strand, within HP15_3873 at 4100.173 kb on - strand, within HP15_3873 at 4100.221 kb on + strand, within HP15_3873 at 4100.241 kb on + strand, within HP15_3873 at 4100.295 kb on - strand, within HP15_3873 at 4100.300 kb on - strand, within HP15_3873 at 4100.486 kb on - strand, within HP15_3873 at 4100.500 kb on - strand, within HP15_3873 at 4100.750 kb on + strand at 4100.758 kb on - strand at 4100.765 kb on - strand at 4100.765 kb on - strand at 4100.925 kb on + strand at 4100.925 kb on + strand at 4101.183 kb on + strand, within HP15_3874 at 4101.183 kb on + strand, within HP15_3874 at 4101.201 kb on + strand, within HP15_3874 at 4101.241 kb on + strand, within HP15_3874 at 4101.249 kb on - strand, within HP15_3874 at 4101.259 kb on - strand, within HP15_3874 at 4101.269 kb on + strand, within HP15_3874 at 4101.277 kb on - strand, within HP15_3874 at 4101.449 kb on + strand at 4101.457 kb on - strand at 4101.483 kb on - strand at 4101.541 kb on + strand at 4101.542 kb on - strand at 4101.714 kb on + strand, within HP15_3875 at 4101.721 kb on - strand, within HP15_3875 at 4101.758 kb on - strand, within HP15_3875 at 4101.800 kb on - strand, within HP15_3875 at 4101.828 kb on + strand, within HP15_3875 at 4101.853 kb on - strand, within HP15_3875 at 4101.878 kb on - strand, within HP15_3875 at 4101.954 kb on + strand, within HP15_3875 at 4102.003 kb on - strand, within HP15_3875 at 4102.037 kb on + strand, within HP15_3875 at 4102.037 kb on + strand, within HP15_3875 at 4102.039 kb on + strand, within HP15_3875 at 4102.047 kb on - strand, within HP15_3875 at 4102.049 kb on + strand, within HP15_3875 at 4102.193 kb on - strand, within HP15_3875 at 4102.282 kb on + strand, within HP15_3875 at 4102.282 kb on + strand, within HP15_3875 at 4102.348 kb on + strand, within HP15_3875
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 4,099,999 - HP15_3873 0.43 -0.4 4,100,097 + HP15_3873 0.52 -0.7 4,100,173 - HP15_3873 0.59 -0.4 4,100,221 + HP15_3873 0.63 +0.2 4,100,241 + HP15_3873 0.65 -1.2 4,100,295 - HP15_3873 0.70 -2.2 4,100,300 - HP15_3873 0.70 -1.3 4,100,486 - HP15_3873 0.87 -0.7 4,100,500 - HP15_3873 0.89 +0.2 4,100,750 + +1.6 4,100,758 - -0.1 4,100,765 - -0.9 4,100,765 - +0.3 4,100,925 + +0.4 4,100,925 + -1.9 4,101,183 + HP15_3874 0.46 -0.7 4,101,183 + HP15_3874 0.46 +1.7 4,101,201 + HP15_3874 0.51 -0.7 4,101,241 + HP15_3874 0.61 -0.0 4,101,249 - HP15_3874 0.62 -2.0 4,101,259 - HP15_3874 0.65 -0.7 4,101,269 + HP15_3874 0.67 -0.4 4,101,277 - HP15_3874 0.69 +1.0 4,101,449 + +1.3 4,101,457 - +0.4 4,101,483 - -0.1 4,101,541 + -0.2 4,101,542 - -0.6 4,101,714 + HP15_3875 0.22 -0.4 4,101,721 - HP15_3875 0.23 -0.2 4,101,758 - HP15_3875 0.25 +0.4 4,101,800 - HP15_3875 0.28 +0.9 4,101,828 + HP15_3875 0.30 -1.1 4,101,853 - HP15_3875 0.32 +1.2 4,101,878 - HP15_3875 0.34 -0.5 4,101,954 + HP15_3875 0.40 -1.4 4,102,003 - HP15_3875 0.43 -0.1 4,102,037 + HP15_3875 0.46 -0.6 4,102,037 + HP15_3875 0.46 +0.4 4,102,039 + HP15_3875 0.46 -2.7 4,102,047 - HP15_3875 0.46 -0.2 4,102,049 + HP15_3875 0.47 +1.2 4,102,193 - HP15_3875 0.57 -0.6 4,102,282 + HP15_3875 0.64 +0.4 4,102,282 + HP15_3875 0.64 -0.6 4,102,348 + HP15_3875 0.68 -1.0
Or see this region's nucleotide sequence