Strain Fitness in Marinobacter adhaerens HP15 around HP15_3832

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3830 and HP15_3831 are separated by 246 nucleotidesHP15_3831 and HP15_3832 are separated by 87 nucleotidesHP15_3832 and HP15_3833 are separated by 25 nucleotides HP15_3830: HP15_3830 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 4,056,823 to 4,058,133 _3830 HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985 _3831 HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657 _3832 HP15_3833: HP15_3833 - nitrous-oxide reductase transcriptional activator NosR, at 4,059,683 to 4,061,749 _3833 Position (kb) 4059 4060Strain fitness (log2 ratio) -3 -2 -1 0 1at 4058.079 kb on - strandat 4058.123 kb on + strandat 4058.137 kb on + strandat 4058.145 kb on - strandat 4058.145 kb on - strandat 4058.245 kb on + strandat 4058.245 kb on + strandat 4058.335 kb on + strandat 4058.343 kb on - strandat 4058.480 kb on + strand, within HP15_3831at 4058.528 kb on + strand, within HP15_3831at 4058.569 kb on + strand, within HP15_3831at 4058.611 kb on - strand, within HP15_3831at 4058.736 kb on - strand, within HP15_3831at 4058.759 kb on + strand, within HP15_3831at 4058.788 kb on + strand, within HP15_3831at 4058.793 kb on + strand, within HP15_3831at 4058.892 kb on + strand, within HP15_3831at 4059.155 kb on - strand, within HP15_3832at 4059.270 kb on - strand, within HP15_3832at 4059.275 kb on + strand, within HP15_3832at 4059.658 kb on + strandat 4059.886 kb on + strandat 4059.887 kb on - strandat 4059.894 kb on - strand, within HP15_3833at 4059.894 kb on - strand, within HP15_3833at 4060.299 kb on - strand, within HP15_3833at 4060.315 kb on + strand, within HP15_3833at 4060.323 kb on - strand, within HP15_3833at 4060.381 kb on + strand, within HP15_3833at 4060.383 kb on + strand, within HP15_3833at 4060.391 kb on - strand, within HP15_3833at 4060.391 kb on - strand, within HP15_3833at 4060.438 kb on + strand, within HP15_3833at 4060.594 kb on + strand, within HP15_3833at 4060.602 kb on - strand, within HP15_3833at 4060.650 kb on - strand, within HP15_3833

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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4,058,079 - +1.5
4,058,123 + -0.2
4,058,137 + +1.4
4,058,145 - -1.1
4,058,145 - -0.3
4,058,245 + +1.0
4,058,245 + +0.9
4,058,335 + -0.5
4,058,343 - -0.3
4,058,480 + HP15_3831 0.17 -0.3
4,058,528 + HP15_3831 0.24 -1.3
4,058,569 + HP15_3831 0.31 -1.7
4,058,611 - HP15_3831 0.38 +0.0
4,058,736 - HP15_3831 0.59 +0.5
4,058,759 + HP15_3831 0.63 +1.4
4,058,788 + HP15_3831 0.67 +0.3
4,058,793 + HP15_3831 0.68 +0.3
4,058,892 + HP15_3831 0.84 +1.2
4,059,155 - HP15_3832 0.14 +0.2
4,059,270 - HP15_3832 0.34 -0.9
4,059,275 + HP15_3832 0.35 -1.6
4,059,658 + -0.3
4,059,886 + -2.8
4,059,887 - +1.2
4,059,894 - HP15_3833 0.10 -0.1
4,059,894 - HP15_3833 0.10 -0.7
4,060,299 - HP15_3833 0.30 +0.5
4,060,315 + HP15_3833 0.31 -0.2
4,060,323 - HP15_3833 0.31 +0.7
4,060,381 + HP15_3833 0.34 -0.6
4,060,383 + HP15_3833 0.34 +0.9
4,060,391 - HP15_3833 0.34 -0.9
4,060,391 - HP15_3833 0.34 +0.8
4,060,438 + HP15_3833 0.37 +1.0
4,060,594 + HP15_3833 0.44 +0.4
4,060,602 - HP15_3833 0.44 +0.5
4,060,650 - HP15_3833 0.47 +1.6

Or see this region's nucleotide sequence