Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3830 and HP15_3831 are separated by 246 nucleotides HP15_3831 and HP15_3832 are separated by 87 nucleotides HP15_3832 and HP15_3833 are separated by 25 nucleotides
HP15_3830: HP15_3830 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 4,056,823 to 4,058,133
_3830
HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985
_3831
HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657
_3832
HP15_3833: HP15_3833 - nitrous-oxide reductase transcriptional activator NosR, at 4,059,683 to 4,061,749
_3833
Position (kb)
4059
4060 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4058.079 kb on - strand at 4058.123 kb on + strand at 4058.137 kb on + strand at 4058.145 kb on - strand at 4058.145 kb on - strand at 4058.245 kb on + strand at 4058.245 kb on + strand at 4058.335 kb on + strand at 4058.343 kb on - strand at 4058.480 kb on + strand, within HP15_3831 at 4058.528 kb on + strand, within HP15_3831 at 4058.569 kb on + strand, within HP15_3831 at 4058.611 kb on - strand, within HP15_3831 at 4058.736 kb on - strand, within HP15_3831 at 4058.759 kb on + strand, within HP15_3831 at 4058.788 kb on + strand, within HP15_3831 at 4058.793 kb on + strand, within HP15_3831 at 4058.892 kb on + strand, within HP15_3831 at 4059.155 kb on - strand, within HP15_3832 at 4059.270 kb on - strand, within HP15_3832 at 4059.275 kb on + strand, within HP15_3832 at 4059.658 kb on + strand at 4059.886 kb on + strand at 4059.887 kb on - strand at 4059.894 kb on - strand, within HP15_3833 at 4059.894 kb on - strand, within HP15_3833 at 4060.299 kb on - strand, within HP15_3833 at 4060.315 kb on + strand, within HP15_3833 at 4060.323 kb on - strand, within HP15_3833 at 4060.381 kb on + strand, within HP15_3833 at 4060.383 kb on + strand, within HP15_3833 at 4060.391 kb on - strand, within HP15_3833 at 4060.391 kb on - strand, within HP15_3833 at 4060.438 kb on + strand, within HP15_3833 at 4060.594 kb on + strand, within HP15_3833 at 4060.602 kb on - strand, within HP15_3833 at 4060.650 kb on - strand, within HP15_3833
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 4,058,079 - +1.5 4,058,123 + -0.2 4,058,137 + +1.4 4,058,145 - -1.1 4,058,145 - -0.3 4,058,245 + +1.0 4,058,245 + +0.9 4,058,335 + -0.5 4,058,343 - -0.3 4,058,480 + HP15_3831 0.17 -0.3 4,058,528 + HP15_3831 0.24 -1.3 4,058,569 + HP15_3831 0.31 -1.7 4,058,611 - HP15_3831 0.38 +0.0 4,058,736 - HP15_3831 0.59 +0.5 4,058,759 + HP15_3831 0.63 +1.4 4,058,788 + HP15_3831 0.67 +0.3 4,058,793 + HP15_3831 0.68 +0.3 4,058,892 + HP15_3831 0.84 +1.2 4,059,155 - HP15_3832 0.14 +0.2 4,059,270 - HP15_3832 0.34 -0.9 4,059,275 + HP15_3832 0.35 -1.6 4,059,658 + -0.3 4,059,886 + -2.8 4,059,887 - +1.2 4,059,894 - HP15_3833 0.10 -0.1 4,059,894 - HP15_3833 0.10 -0.7 4,060,299 - HP15_3833 0.30 +0.5 4,060,315 + HP15_3833 0.31 -0.2 4,060,323 - HP15_3833 0.31 +0.7 4,060,381 + HP15_3833 0.34 -0.6 4,060,383 + HP15_3833 0.34 +0.9 4,060,391 - HP15_3833 0.34 -0.9 4,060,391 - HP15_3833 0.34 +0.8 4,060,438 + HP15_3833 0.37 +1.0 4,060,594 + HP15_3833 0.44 +0.4 4,060,602 - HP15_3833 0.44 +0.5 4,060,650 - HP15_3833 0.47 +1.6
Or see this region's nucleotide sequence