Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_336 and HP15_337 are separated by 108 nucleotides HP15_337 and HP15_338 overlap by 20 nucleotides HP15_338 and HP15_339 overlap by 4 nucleotides HP15_339 and HP15_340 are separated by 59 nucleotides
HP15_336: HP15_336 - conserved hypothetical protein, at 331,871 to 333,457
_336
HP15_337: HP15_337 - hypothetical protein, at 333,566 to 333,688
_337
HP15_338: HP15_338 - penicillin-binding protein 1B, at 333,669 to 335,909
_338
HP15_339: HP15_339 - conserved hypothetical protein, secreted, at 335,906 to 336,502
_339
HP15_340: HP15_340 - lipoprotein, at 336,562 to 337,497
_340
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 332.675 kb on + strand, within HP15_336 at 332.675 kb on + strand, within HP15_336 at 332.713 kb on + strand, within HP15_336 at 332.793 kb on + strand, within HP15_336 at 332.934 kb on + strand, within HP15_336 at 333.012 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.245 kb on + strand, within HP15_336 at 333.406 kb on + strand at 333.406 kb on + strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.455 kb on - strand at 333.475 kb on + strand at 333.618 kb on - strand, within HP15_337 at 333.691 kb on + strand at 333.709 kb on + strand at 333.801 kb on - strand at 333.980 kb on + strand, within HP15_338 at 334.061 kb on + strand, within HP15_338 at 334.208 kb on + strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.462 kb on - strand, within HP15_338 at 334.842 kb on - strand, within HP15_338 at 335.043 kb on + strand, within HP15_338 at 335.046 kb on - strand, within HP15_338 at 335.102 kb on - strand, within HP15_338 at 335.168 kb on + strand, within HP15_338 at 335.201 kb on + strand, within HP15_338 at 335.379 kb on + strand, within HP15_338 at 335.416 kb on + strand, within HP15_338 at 335.494 kb on + strand, within HP15_338 at 335.516 kb on - strand, within HP15_338 at 335.518 kb on - strand, within HP15_338 at 335.518 kb on - strand, within HP15_338 at 335.518 kb on - strand, within HP15_338 at 335.518 kb on - strand, within HP15_338 at 335.529 kb on - strand, within HP15_338 at 335.531 kb on + strand, within HP15_338 at 335.576 kb on + strand, within HP15_338 at 335.576 kb on - strand, within HP15_338 at 335.615 kb on + strand, within HP15_338 at 335.623 kb on - strand, within HP15_338 at 335.782 kb on + strand at 335.784 kb on + strand at 335.803 kb on + strand at 335.928 kb on + strand at 335.936 kb on - strand at 335.941 kb on - strand at 336.161 kb on - strand, within HP15_339 at 336.196 kb on + strand, within HP15_339 at 336.414 kb on - strand, within HP15_339 at 336.454 kb on - strand at 336.465 kb on + strand at 336.528 kb on + strand at 336.548 kb on + strand at 336.552 kb on + strand at 336.612 kb on + strand at 336.612 kb on + strand at 336.620 kb on - strand at 336.727 kb on + strand, within HP15_340 at 336.732 kb on + strand, within HP15_340 at 336.801 kb on + strand, within HP15_340 at 336.809 kb on - strand, within HP15_340 at 336.810 kb on - strand, within HP15_340 at 336.817 kb on + strand, within HP15_340 at 336.848 kb on + strand, within HP15_340
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 332,675 + HP15_336 0.51 -0.2 332,675 + HP15_336 0.51 -0.5 332,713 + HP15_336 0.53 -0.4 332,793 + HP15_336 0.58 +0.7 332,934 + HP15_336 0.67 -0.8 333,012 + HP15_336 0.72 +1.6 333,240 + HP15_336 0.86 +0.7 333,240 + HP15_336 0.86 +0.6 333,245 + HP15_336 0.87 -2.6 333,406 + -0.6 333,406 + -0.9 333,414 - +0.2 333,414 - +0.5 333,414 - -1.2 333,414 - +0.7 333,455 - -0.0 333,475 + +0.0 333,618 - HP15_337 0.42 +0.2 333,691 + -0.8 333,709 + -2.6 333,801 - -0.6 333,980 + HP15_338 0.14 +0.7 334,061 + HP15_338 0.17 -1.2 334,208 + HP15_338 0.24 +0.3 334,231 - HP15_338 0.25 +1.4 334,231 - HP15_338 0.25 +1.0 334,242 + HP15_338 0.26 +0.8 334,242 + HP15_338 0.26 +0.4 334,410 - HP15_338 0.33 +0.5 334,410 - HP15_338 0.33 -0.2 334,462 - HP15_338 0.35 -1.2 334,842 - HP15_338 0.52 -0.3 335,043 + HP15_338 0.61 -0.5 335,046 - HP15_338 0.61 -0.1 335,102 - HP15_338 0.64 +0.9 335,168 + HP15_338 0.67 +0.3 335,201 + HP15_338 0.68 -0.2 335,379 + HP15_338 0.76 +0.8 335,416 + HP15_338 0.78 +1.0 335,494 + HP15_338 0.81 -0.5 335,516 - HP15_338 0.82 +0.9 335,518 - HP15_338 0.83 +1.1 335,518 - HP15_338 0.83 +1.4 335,518 - HP15_338 0.83 +0.4 335,518 - HP15_338 0.83 +0.1 335,529 - HP15_338 0.83 -1.6 335,531 + HP15_338 0.83 +0.6 335,576 + HP15_338 0.85 +1.3 335,576 - HP15_338 0.85 -1.2 335,615 + HP15_338 0.87 +1.1 335,623 - HP15_338 0.87 +0.9 335,782 + -1.6 335,784 + +1.0 335,803 + -0.3 335,928 + +1.2 335,936 - +0.3 335,941 - -0.4 336,161 - HP15_339 0.43 +0.4 336,196 + HP15_339 0.49 -1.7 336,414 - HP15_339 0.85 -0.8 336,454 - +0.1 336,465 + +0.0 336,528 + +0.6 336,548 + +0.8 336,552 + +1.0 336,612 + +0.3 336,612 + +1.3 336,620 - -1.2 336,727 + HP15_340 0.18 -0.8 336,732 + HP15_340 0.18 -0.2 336,801 + HP15_340 0.26 +0.7 336,809 - HP15_340 0.26 -0.1 336,810 - HP15_340 0.26 +0.5 336,817 + HP15_340 0.27 -0.7 336,848 + HP15_340 0.31 +0.9
Or see this region's nucleotide sequence