Strain Fitness in Marinobacter adhaerens HP15 around HP15_3169

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3168 and HP15_3169 overlap by 19 nucleotidesHP15_3169 and HP15_3170 overlap by 4 nucleotidesHP15_3170 and HP15_3171 are separated by 1 nucleotides HP15_3168: HP15_3168 - conserved hypothetical protein, secreted, at 3,321,692 to 3,322,864 _3168 HP15_3169: HP15_3169 - 40-residue YVTN family beta-propeller repeat protein, at 3,322,846 to 3,323,880 _3169 HP15_3170: HP15_3170 - ABC efflux transporter, ATP-binding protein, at 3,323,877 to 3,324,599 _3170 HP15_3171: HP15_3171 - ABC efflux transporter, permease protein, at 3,324,601 to 3,325,404 _3171 Position (kb) 3322 3323 3324Strain fitness (log2 ratio) -2 -1 0 1at 3321.915 kb on - strand, within HP15_3168at 3321.923 kb on + strand, within HP15_3168at 3321.923 kb on + strand, within HP15_3168at 3322.154 kb on - strand, within HP15_3168at 3322.308 kb on - strand, within HP15_3168at 3322.363 kb on + strand, within HP15_3168at 3322.366 kb on - strand, within HP15_3168at 3322.570 kb on - strand, within HP15_3168at 3322.616 kb on + strand, within HP15_3168at 3322.624 kb on - strand, within HP15_3168at 3322.626 kb on + strand, within HP15_3168at 3322.729 kb on - strand, within HP15_3168at 3322.761 kb on - strandat 3322.963 kb on + strand, within HP15_3169at 3322.963 kb on + strand, within HP15_3169at 3322.971 kb on - strand, within HP15_3169at 3322.971 kb on - strand, within HP15_3169at 3322.971 kb on - strand, within HP15_3169at 3322.971 kb on - strand, within HP15_3169at 3323.006 kb on - strand, within HP15_3169at 3323.062 kb on - strand, within HP15_3169at 3323.085 kb on + strand, within HP15_3169at 3323.099 kb on - strand, within HP15_3169at 3323.109 kb on + strand, within HP15_3169at 3323.181 kb on - strand, within HP15_3169at 3323.181 kb on - strand, within HP15_3169at 3323.252 kb on + strand, within HP15_3169at 3323.325 kb on + strand, within HP15_3169at 3323.325 kb on + strand, within HP15_3169at 3323.442 kb on + strand, within HP15_3169at 3323.460 kb on + strand, within HP15_3169at 3323.468 kb on - strand, within HP15_3169at 3323.490 kb on - strand, within HP15_3169at 3323.542 kb on - strand, within HP15_3169at 3323.542 kb on - strand, within HP15_3169at 3323.597 kb on - strand, within HP15_3169at 3323.597 kb on - strand, within HP15_3169at 3323.658 kb on - strand, within HP15_3169at 3323.677 kb on + strand, within HP15_3169at 3323.677 kb on + strand, within HP15_3169at 3323.677 kb on + strand, within HP15_3169at 3323.685 kb on - strand, within HP15_3169at 3323.735 kb on + strand, within HP15_3169at 3323.739 kb on + strand, within HP15_3169at 3323.810 kb on + strandat 3324.016 kb on - strand, within HP15_3170at 3324.042 kb on - strand, within HP15_3170at 3324.071 kb on - strandat 3324.153 kb on + strand, within HP15_3170at 3324.177 kb on + strand, within HP15_3170at 3324.177 kb on + strand, within HP15_3170at 3324.177 kb on + strand, within HP15_3170at 3324.323 kb on - strand, within HP15_3170at 3324.331 kb on - strand, within HP15_3170at 3324.364 kb on + strand, within HP15_3170at 3324.372 kb on - strand, within HP15_3170at 3324.401 kb on + strand, within HP15_3170at 3324.403 kb on + strand, within HP15_3170at 3324.403 kb on + strand, within HP15_3170at 3324.411 kb on - strand, within HP15_3170at 3324.411 kb on - strand, within HP15_3170at 3324.440 kb on - strand, within HP15_3170at 3324.472 kb on - strand, within HP15_3170at 3324.551 kb on - strandat 3324.553 kb on + strandat 3324.592 kb on - strandat 3324.679 kb on + strandat 3324.691 kb on + strand, within HP15_3171at 3324.711 kb on - strand, within HP15_3171at 3324.716 kb on - strand, within HP15_3171at 3324.735 kb on + strand, within HP15_3171at 3324.748 kb on - strand, within HP15_3171at 3324.753 kb on - strand, within HP15_3171at 3324.753 kb on - strand, within HP15_3171at 3324.753 kb on - strand, within HP15_3171at 3324.753 kb on - strand, within HP15_3171at 3324.763 kb on + strand, within HP15_3171at 3324.806 kb on + strand, within HP15_3171at 3324.806 kb on + strand, within HP15_3171at 3324.806 kb on + strand, within HP15_3171at 3324.814 kb on - strand, within HP15_3171at 3324.842 kb on - strand, within HP15_3171at 3324.872 kb on + strand, within HP15_3171at 3324.873 kb on - strand, within HP15_3171

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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3,321,915 - HP15_3168 0.19 +1.0
3,321,923 + HP15_3168 0.20 -0.9
3,321,923 + HP15_3168 0.20 -0.9
3,322,154 - HP15_3168 0.39 +1.0
3,322,308 - HP15_3168 0.53 -0.1
3,322,363 + HP15_3168 0.57 +0.3
3,322,366 - HP15_3168 0.57 -0.6
3,322,570 - HP15_3168 0.75 +1.0
3,322,616 + HP15_3168 0.79 -1.4
3,322,624 - HP15_3168 0.79 -1.3
3,322,626 + HP15_3168 0.80 +1.2
3,322,729 - HP15_3168 0.88 -1.2
3,322,761 - +0.3
3,322,963 + HP15_3169 0.11 +0.2
3,322,963 + HP15_3169 0.11 -0.1
3,322,971 - HP15_3169 0.12 +0.0
3,322,971 - HP15_3169 0.12 +0.3
3,322,971 - HP15_3169 0.12 -1.2
3,322,971 - HP15_3169 0.12 +0.8
3,323,006 - HP15_3169 0.15 +0.4
3,323,062 - HP15_3169 0.21 -0.4
3,323,085 + HP15_3169 0.23 +0.2
3,323,099 - HP15_3169 0.24 -1.7
3,323,109 + HP15_3169 0.25 +0.3
3,323,181 - HP15_3169 0.32 -0.7
3,323,181 - HP15_3169 0.32 -0.4
3,323,252 + HP15_3169 0.39 -0.9
3,323,325 + HP15_3169 0.46 +1.1
3,323,325 + HP15_3169 0.46 -0.6
3,323,442 + HP15_3169 0.58 -0.6
3,323,460 + HP15_3169 0.59 -0.7
3,323,468 - HP15_3169 0.60 +1.1
3,323,490 - HP15_3169 0.62 +0.4
3,323,542 - HP15_3169 0.67 +1.7
3,323,542 - HP15_3169 0.67 -0.6
3,323,597 - HP15_3169 0.73 +0.1
3,323,597 - HP15_3169 0.73 +1.0
3,323,658 - HP15_3169 0.78 +0.8
3,323,677 + HP15_3169 0.80 +0.1
3,323,677 + HP15_3169 0.80 +0.6
3,323,677 + HP15_3169 0.80 -1.1
3,323,685 - HP15_3169 0.81 -1.4
3,323,735 + HP15_3169 0.86 -1.5
3,323,739 + HP15_3169 0.86 +0.1
3,323,810 + +1.2
3,324,016 - HP15_3170 0.19 +0.6
3,324,042 - HP15_3170 0.23 +0.1
3,324,071 - +0.8
3,324,153 + HP15_3170 0.38 +1.0
3,324,177 + HP15_3170 0.41 -1.9
3,324,177 + HP15_3170 0.41 -0.1
3,324,177 + HP15_3170 0.41 +1.2
3,324,323 - HP15_3170 0.62 -1.7
3,324,331 - HP15_3170 0.63 -1.3
3,324,364 + HP15_3170 0.67 +1.0
3,324,372 - HP15_3170 0.68 -0.1
3,324,401 + HP15_3170 0.72 -0.7
3,324,403 + HP15_3170 0.73 +0.7
3,324,403 + HP15_3170 0.73 +0.5
3,324,411 - HP15_3170 0.74 -1.8
3,324,411 - HP15_3170 0.74 -2.2
3,324,440 - HP15_3170 0.78 -0.6
3,324,472 - HP15_3170 0.82 -0.2
3,324,551 - -0.8
3,324,553 + +0.2
3,324,592 - -0.4
3,324,679 + -1.1
3,324,691 + HP15_3171 0.11 +0.1
3,324,711 - HP15_3171 0.14 +0.5
3,324,716 - HP15_3171 0.14 -0.3
3,324,735 + HP15_3171 0.17 +1.6
3,324,748 - HP15_3171 0.18 -0.3
3,324,753 - HP15_3171 0.19 -0.1
3,324,753 - HP15_3171 0.19 +0.4
3,324,753 - HP15_3171 0.19 +0.6
3,324,753 - HP15_3171 0.19 +0.1
3,324,763 + HP15_3171 0.20 +0.8
3,324,806 + HP15_3171 0.25 +0.3
3,324,806 + HP15_3171 0.25 -1.0
3,324,806 + HP15_3171 0.25 -1.4
3,324,814 - HP15_3171 0.26 +0.8
3,324,842 - HP15_3171 0.30 -1.8
3,324,872 + HP15_3171 0.34 -1.2
3,324,873 - HP15_3171 0.34 -0.3

Or see this region's nucleotide sequence