Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3168 and HP15_3169 overlap by 19 nucleotides HP15_3169 and HP15_3170 overlap by 4 nucleotides HP15_3170 and HP15_3171 are separated by 1 nucleotides
HP15_3168: HP15_3168 - conserved hypothetical protein, secreted, at 3,321,692 to 3,322,864
_3168
HP15_3169: HP15_3169 - 40-residue YVTN family beta-propeller repeat protein, at 3,322,846 to 3,323,880
_3169
HP15_3170: HP15_3170 - ABC efflux transporter, ATP-binding protein, at 3,323,877 to 3,324,599
_3170
HP15_3171: HP15_3171 - ABC efflux transporter, permease protein, at 3,324,601 to 3,325,404
_3171
Position (kb)
3322
3323
3324 Strain fitness (log2 ratio)
-2
-1
0
1 at 3321.915 kb on - strand, within HP15_3168 at 3321.923 kb on + strand, within HP15_3168 at 3321.923 kb on + strand, within HP15_3168 at 3322.154 kb on - strand, within HP15_3168 at 3322.308 kb on - strand, within HP15_3168 at 3322.363 kb on + strand, within HP15_3168 at 3322.366 kb on - strand, within HP15_3168 at 3322.570 kb on - strand, within HP15_3168 at 3322.616 kb on + strand, within HP15_3168 at 3322.624 kb on - strand, within HP15_3168 at 3322.626 kb on + strand, within HP15_3168 at 3322.729 kb on - strand, within HP15_3168 at 3322.761 kb on - strand at 3322.963 kb on + strand, within HP15_3169 at 3322.963 kb on + strand, within HP15_3169 at 3322.971 kb on - strand, within HP15_3169 at 3322.971 kb on - strand, within HP15_3169 at 3322.971 kb on - strand, within HP15_3169 at 3322.971 kb on - strand, within HP15_3169 at 3323.006 kb on - strand, within HP15_3169 at 3323.062 kb on - strand, within HP15_3169 at 3323.085 kb on + strand, within HP15_3169 at 3323.099 kb on - strand, within HP15_3169 at 3323.109 kb on + strand, within HP15_3169 at 3323.181 kb on - strand, within HP15_3169 at 3323.181 kb on - strand, within HP15_3169 at 3323.252 kb on + strand, within HP15_3169 at 3323.325 kb on + strand, within HP15_3169 at 3323.325 kb on + strand, within HP15_3169 at 3323.442 kb on + strand, within HP15_3169 at 3323.460 kb on + strand, within HP15_3169 at 3323.468 kb on - strand, within HP15_3169 at 3323.490 kb on - strand, within HP15_3169 at 3323.542 kb on - strand, within HP15_3169 at 3323.542 kb on - strand, within HP15_3169 at 3323.597 kb on - strand, within HP15_3169 at 3323.597 kb on - strand, within HP15_3169 at 3323.658 kb on - strand, within HP15_3169 at 3323.677 kb on + strand, within HP15_3169 at 3323.677 kb on + strand, within HP15_3169 at 3323.677 kb on + strand, within HP15_3169 at 3323.685 kb on - strand, within HP15_3169 at 3323.735 kb on + strand, within HP15_3169 at 3323.739 kb on + strand, within HP15_3169 at 3323.810 kb on + strand at 3324.016 kb on - strand, within HP15_3170 at 3324.042 kb on - strand, within HP15_3170 at 3324.071 kb on - strand at 3324.153 kb on + strand, within HP15_3170 at 3324.177 kb on + strand, within HP15_3170 at 3324.177 kb on + strand, within HP15_3170 at 3324.177 kb on + strand, within HP15_3170 at 3324.323 kb on - strand, within HP15_3170 at 3324.331 kb on - strand, within HP15_3170 at 3324.364 kb on + strand, within HP15_3170 at 3324.372 kb on - strand, within HP15_3170 at 3324.401 kb on + strand, within HP15_3170 at 3324.403 kb on + strand, within HP15_3170 at 3324.403 kb on + strand, within HP15_3170 at 3324.411 kb on - strand, within HP15_3170 at 3324.411 kb on - strand, within HP15_3170 at 3324.440 kb on - strand, within HP15_3170 at 3324.472 kb on - strand, within HP15_3170 at 3324.551 kb on - strand at 3324.553 kb on + strand at 3324.592 kb on - strand at 3324.679 kb on + strand at 3324.691 kb on + strand, within HP15_3171 at 3324.711 kb on - strand, within HP15_3171 at 3324.716 kb on - strand, within HP15_3171 at 3324.735 kb on + strand, within HP15_3171 at 3324.748 kb on - strand, within HP15_3171 at 3324.753 kb on - strand, within HP15_3171 at 3324.753 kb on - strand, within HP15_3171 at 3324.753 kb on - strand, within HP15_3171 at 3324.753 kb on - strand, within HP15_3171 at 3324.763 kb on + strand, within HP15_3171 at 3324.806 kb on + strand, within HP15_3171 at 3324.806 kb on + strand, within HP15_3171 at 3324.806 kb on + strand, within HP15_3171 at 3324.814 kb on - strand, within HP15_3171 at 3324.842 kb on - strand, within HP15_3171 at 3324.872 kb on + strand, within HP15_3171 at 3324.873 kb on - strand, within HP15_3171
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 3,321,915 - HP15_3168 0.19 +1.0 3,321,923 + HP15_3168 0.20 -0.9 3,321,923 + HP15_3168 0.20 -0.9 3,322,154 - HP15_3168 0.39 +1.0 3,322,308 - HP15_3168 0.53 -0.1 3,322,363 + HP15_3168 0.57 +0.3 3,322,366 - HP15_3168 0.57 -0.6 3,322,570 - HP15_3168 0.75 +1.0 3,322,616 + HP15_3168 0.79 -1.4 3,322,624 - HP15_3168 0.79 -1.3 3,322,626 + HP15_3168 0.80 +1.2 3,322,729 - HP15_3168 0.88 -1.2 3,322,761 - +0.3 3,322,963 + HP15_3169 0.11 +0.2 3,322,963 + HP15_3169 0.11 -0.1 3,322,971 - HP15_3169 0.12 +0.0 3,322,971 - HP15_3169 0.12 +0.3 3,322,971 - HP15_3169 0.12 -1.2 3,322,971 - HP15_3169 0.12 +0.8 3,323,006 - HP15_3169 0.15 +0.4 3,323,062 - HP15_3169 0.21 -0.4 3,323,085 + HP15_3169 0.23 +0.2 3,323,099 - HP15_3169 0.24 -1.7 3,323,109 + HP15_3169 0.25 +0.3 3,323,181 - HP15_3169 0.32 -0.7 3,323,181 - HP15_3169 0.32 -0.4 3,323,252 + HP15_3169 0.39 -0.9 3,323,325 + HP15_3169 0.46 +1.1 3,323,325 + HP15_3169 0.46 -0.6 3,323,442 + HP15_3169 0.58 -0.6 3,323,460 + HP15_3169 0.59 -0.7 3,323,468 - HP15_3169 0.60 +1.1 3,323,490 - HP15_3169 0.62 +0.4 3,323,542 - HP15_3169 0.67 +1.7 3,323,542 - HP15_3169 0.67 -0.6 3,323,597 - HP15_3169 0.73 +0.1 3,323,597 - HP15_3169 0.73 +1.0 3,323,658 - HP15_3169 0.78 +0.8 3,323,677 + HP15_3169 0.80 +0.1 3,323,677 + HP15_3169 0.80 +0.6 3,323,677 + HP15_3169 0.80 -1.1 3,323,685 - HP15_3169 0.81 -1.4 3,323,735 + HP15_3169 0.86 -1.5 3,323,739 + HP15_3169 0.86 +0.1 3,323,810 + +1.2 3,324,016 - HP15_3170 0.19 +0.6 3,324,042 - HP15_3170 0.23 +0.1 3,324,071 - +0.8 3,324,153 + HP15_3170 0.38 +1.0 3,324,177 + HP15_3170 0.41 -1.9 3,324,177 + HP15_3170 0.41 -0.1 3,324,177 + HP15_3170 0.41 +1.2 3,324,323 - HP15_3170 0.62 -1.7 3,324,331 - HP15_3170 0.63 -1.3 3,324,364 + HP15_3170 0.67 +1.0 3,324,372 - HP15_3170 0.68 -0.1 3,324,401 + HP15_3170 0.72 -0.7 3,324,403 + HP15_3170 0.73 +0.7 3,324,403 + HP15_3170 0.73 +0.5 3,324,411 - HP15_3170 0.74 -1.8 3,324,411 - HP15_3170 0.74 -2.2 3,324,440 - HP15_3170 0.78 -0.6 3,324,472 - HP15_3170 0.82 -0.2 3,324,551 - -0.8 3,324,553 + +0.2 3,324,592 - -0.4 3,324,679 + -1.1 3,324,691 + HP15_3171 0.11 +0.1 3,324,711 - HP15_3171 0.14 +0.5 3,324,716 - HP15_3171 0.14 -0.3 3,324,735 + HP15_3171 0.17 +1.6 3,324,748 - HP15_3171 0.18 -0.3 3,324,753 - HP15_3171 0.19 -0.1 3,324,753 - HP15_3171 0.19 +0.4 3,324,753 - HP15_3171 0.19 +0.6 3,324,753 - HP15_3171 0.19 +0.1 3,324,763 + HP15_3171 0.20 +0.8 3,324,806 + HP15_3171 0.25 +0.3 3,324,806 + HP15_3171 0.25 -1.0 3,324,806 + HP15_3171 0.25 -1.4 3,324,814 - HP15_3171 0.26 +0.8 3,324,842 - HP15_3171 0.30 -1.8 3,324,872 + HP15_3171 0.34 -1.2 3,324,873 - HP15_3171 0.34 -0.3
Or see this region's nucleotide sequence