Strain Fitness in Marinobacter adhaerens HP15 around HP15_3155

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3153 and HP15_3154 are separated by 130 nucleotidesHP15_3154 and HP15_3155 are separated by 18 nucleotidesHP15_3155 and HP15_3156 are separated by 15 nucleotides HP15_3153: HP15_3153 - protein containing cyclic nucleotide-binding domain, at 3,306,499 to 3,307,197 _3153 HP15_3154: HP15_3154 - class II aldolase/adducin family protein, at 3,307,328 to 3,308,098 _3154 HP15_3155: HP15_3155 - metal dependent phosphohydrolase, at 3,308,117 to 3,308,713 _3155 HP15_3156: HP15_3156 - glutamate-ammonia ligase, at 3,308,729 to 3,310,087 _3156 Position (kb) 3308 3309Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3307.201 kb on - strandat 3307.276 kb on + strandat 3307.311 kb on + strandat 3307.311 kb on + strandat 3307.311 kb on + strandat 3307.311 kb on + strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.319 kb on - strandat 3307.324 kb on - strandat 3307.330 kb on + strandat 3307.376 kb on + strandat 3307.419 kb on + strand, within HP15_3154at 3307.479 kb on - strand, within HP15_3154at 3307.535 kb on + strand, within HP15_3154at 3307.559 kb on - strand, within HP15_3154at 3307.581 kb on - strand, within HP15_3154at 3307.661 kb on + strand, within HP15_3154at 3307.692 kb on + strand, within HP15_3154at 3307.717 kb on + strand, within HP15_3154at 3307.724 kb on + strand, within HP15_3154at 3307.725 kb on - strand, within HP15_3154at 3307.928 kb on + strand, within HP15_3154at 3307.936 kb on - strand, within HP15_3154at 3308.023 kb on + strandat 3308.023 kb on + strandat 3308.032 kb on - strandat 3308.171 kb on + strandat 3308.171 kb on + strandat 3308.253 kb on - strand, within HP15_3155at 3308.253 kb on - strand, within HP15_3155at 3308.393 kb on - strand, within HP15_3155at 3308.474 kb on - strand, within HP15_3155at 3308.620 kb on - strand, within HP15_3155at 3308.763 kb on + strandat 3308.863 kb on + strandat 3308.982 kb on - strand, within HP15_3156at 3308.983 kb on - strand, within HP15_3156at 3308.983 kb on - strand, within HP15_3156at 3309.095 kb on + strand, within HP15_3156at 3309.208 kb on + strand, within HP15_3156at 3309.230 kb on + strand, within HP15_3156at 3309.241 kb on + strand, within HP15_3156at 3309.306 kb on - strand, within HP15_3156at 3309.326 kb on + strand, within HP15_3156at 3309.345 kb on + strand, within HP15_3156at 3309.347 kb on + strand, within HP15_3156at 3309.473 kb on - strand, within HP15_3156at 3309.498 kb on + strand, within HP15_3156at 3309.541 kb on + strand, within HP15_3156at 3309.549 kb on - strand, within HP15_3156at 3309.564 kb on + strand, within HP15_3156at 3309.585 kb on - strand, within HP15_3156at 3309.613 kb on + strand, within HP15_3156at 3309.618 kb on + strand, within HP15_3156at 3309.621 kb on - strand, within HP15_3156at 3309.621 kb on - strand, within HP15_3156at 3309.637 kb on - strand, within HP15_3156at 3309.642 kb on + strand, within HP15_3156

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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3,307,201 - +0.2
3,307,276 + -0.0
3,307,311 + -1.0
3,307,311 + +1.6
3,307,311 + -1.2
3,307,311 + -0.6
3,307,319 - -0.8
3,307,319 - +0.8
3,307,319 - +0.5
3,307,319 - +0.1
3,307,319 - -0.1
3,307,319 - -0.3
3,307,319 - +0.1
3,307,319 - -0.1
3,307,319 - +0.8
3,307,324 - +0.0
3,307,330 + +1.3
3,307,376 + -3.5
3,307,419 + HP15_3154 0.12 -0.6
3,307,479 - HP15_3154 0.20 -2.1
3,307,535 + HP15_3154 0.27 -0.5
3,307,559 - HP15_3154 0.30 +1.0
3,307,581 - HP15_3154 0.33 -0.4
3,307,661 + HP15_3154 0.43 +2.3
3,307,692 + HP15_3154 0.47 +0.9
3,307,717 + HP15_3154 0.50 +0.7
3,307,724 + HP15_3154 0.51 -2.4
3,307,725 - HP15_3154 0.51 -0.4
3,307,928 + HP15_3154 0.78 -0.9
3,307,936 - HP15_3154 0.79 -1.2
3,308,023 + -1.5
3,308,023 + -1.3
3,308,032 - -0.2
3,308,171 + +0.4
3,308,171 + -2.1
3,308,253 - HP15_3155 0.23 -0.1
3,308,253 - HP15_3155 0.23 -0.5
3,308,393 - HP15_3155 0.46 +0.2
3,308,474 - HP15_3155 0.60 +0.8
3,308,620 - HP15_3155 0.84 +0.7
3,308,763 + -0.8
3,308,863 + +0.0
3,308,982 - HP15_3156 0.19 +1.7
3,308,983 - HP15_3156 0.19 +1.1
3,308,983 - HP15_3156 0.19 +1.5
3,309,095 + HP15_3156 0.27 -0.2
3,309,208 + HP15_3156 0.35 -1.9
3,309,230 + HP15_3156 0.37 -0.3
3,309,241 + HP15_3156 0.38 +0.6
3,309,306 - HP15_3156 0.42 -0.1
3,309,326 + HP15_3156 0.44 -0.3
3,309,345 + HP15_3156 0.45 -0.3
3,309,347 + HP15_3156 0.45 -0.6
3,309,473 - HP15_3156 0.55 -1.1
3,309,498 + HP15_3156 0.57 -0.9
3,309,541 + HP15_3156 0.60 +1.1
3,309,549 - HP15_3156 0.60 -0.1
3,309,564 + HP15_3156 0.61 -0.1
3,309,585 - HP15_3156 0.63 -0.4
3,309,613 + HP15_3156 0.65 -0.8
3,309,618 + HP15_3156 0.65 -0.1
3,309,621 - HP15_3156 0.66 -0.7
3,309,621 - HP15_3156 0.66 +1.4
3,309,637 - HP15_3156 0.67 -0.6
3,309,642 + HP15_3156 0.67 -2.0

Or see this region's nucleotide sequence